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...taaactagcaaatgaaatgcacaaggtgaacttgtattttctcatgattgtttatttgtgcactggatatgtgagttggtcttggctattttctgtgcagGGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACATTACAAGGAGAAGAGCTATCGCAGGCCTATGCCAGTGGGGATGTGTTT
species | Oryza sativa |
transcript | LOC_Os07g01030.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACAGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAG GGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACEST: gi|29613025|gb|CB618038.1|CB618038
genomic: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGgtgagtattg ... ttctgtgcagGGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTAC
EST: GACAGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAG GGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACEST: gi|29657825|gb|CB654100.1|CB654100
genomic: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGgtgagtattg ... ttctgtgcagGGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTAC
EST: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAG GGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACEST: gi|157651839|gb|EX451473.1|EX451473
genomic: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGgtgagtattg ... ttctgtgcagGGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTAC
EST: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAG GGCTCAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACEST: gi|29667657|gb|CB663932.1|CB663932
genomic: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGgtgagtattg ... ttctgtgcagGGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTAC
EST: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAG GGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACEST: gi|29669005|gb|CB665280.1|CB665280
genomic: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGgtgagtattg ... ttctgtgcagGGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTAC
EST: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAG GGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTAC
genomic: GACCGACTTCCAGGATCAAGAATCGCATTTGTTGGTGATGGGCCATTCAGgtgagtattg ... ttctgtgcagGGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTAC
gattgtttatttgtgcactggatatgtgagttggtcttggctattttctgtgcagGGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACATTACAAGGAGAAGAGCTATCGCAGGCCTATGCCAGTGGGGATGTGTTT
ctattttct CT-rich tract
tttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaactagcaaatgaaatgcacaaggtgaacttgtattttctcatgattgtttatttgtgcactggatatgtgagttggtcttggctattttctgtgcagGGCTGAACTCCAACTGATGTTCACGGGAATGCCTGCAGTGTTCACTGGTACATTACAAGGAGAAGAGCTATCGCAGGCCTATGCCAGTGGGGATGTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - -gcaaatg
- - - - - - - -aatgcac
- - - - - - - - - - - - - - - cttgtat
- - - - - - - - - - - - - - - - - - - - -tcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcactg