1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagataaagatgctagctcctcattgctgtctcccatcaattttacttcaaaatatgtttcttactgtaacattgactgaatcttgcagATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAATGAAAAGCTGCACAGGATATCACAGAACATCAAAAAGCATGAGAAAGAAA
species | Oryza sativa |
transcript | LOC_Os06g51100.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGGCATAAAAGAAAGTGTTCGTGACGTCGTACTTGGAGGAGGAGAATAT ATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAATEST: gi|157650741|gb|EX450375.1|EX450375
genomic: CTGGCATAAAAGAAAGTGTTCGTGACGTCGTACTTGGAGGAGGAGAATATgtaagataaa ... aatcttgcagATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAAT
EST: GTACTTGGAGGAGGAGAATAT ATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAATEST: gi|88221691|gb|CI221647.1|CI221647
genomic: GTACTTGGAGGAGGAGAATATgtaagataaa ... aatcttgcagATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAAT
EST: CTGGCATAAAAGAAAGTGTTCGTGACGTCGTACTTGGAGGAGGAGAATAT ATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAATEST: gi|86497247|gb|CI139880.1|CI139880
genomic: CTGGCATAAAAGAAAGTGTTCGTGACGTCGTACTTGGAGGAGGAGAATATgtaagataaa ... aatcttgcagATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAAT
EST: CTGGCATAAAAGAAAGTGTTCGTGACGTCGTACTTGGAGGAGGAGAATAT ATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAATEST: gi|66914162|gb|CX101010.1|CX101010
genomic: CTGGCATAAAAGAAAGTGTTCGTGACGTCGTACTTGGAGGAGGAGAATATgtaagataaa ... aatcttgcagATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAAT
EST: CTGGCATAAAAGAAAGTGTTCGTGACGTCGTACTTGGAGGAGGAGAATAT ATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAAT
genomic: CTGGCATAAAAGAAAGTGTTCGTGACGTCGTACTTGGAGGAGGAGAATATgtaagataaa ... aatcttgcagATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAAT
catcaattttacttcaaaatatgtttcttactgtaacattgactgaatcttgcagATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAATGAAAAGCTGCACAGGATATCACAGAACATCAAAAAGCATGAGAAAGAAA
attttacttcaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagataaagatgctagctcctcattgctgtctcccatcaattttacttcaaaatatgtttcttactgtaacattgactgaatcttgcagATTGTGAATGACCTGAAGTTCACCGTCAATCATGCTGTGGAACCAATCAATGAAAAGCTGCACAGGATATCACAGAACATCAAAAAGCATGAGAAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA