1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgacttcttgattcatgaaacttatcaccagttgaagaatcattttcttttttcctctgtaaaacttgtgttcttggcctgattgcaatggcagATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATCTTTGCACCCATCGATGCATCGTTCAGTGATGATTCTCCGCTGCTGCCTT
species | Oryza sativa |
transcript | LOC_Os06g50679.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAG ATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATCEST: gi|33678511|gb|CF306750.1|CF306750
genomic: CCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAGgtgacttctt ... gcaatggcagATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATC
EST: CCAGANACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAG ATGTACAATGGAGTEST: gi|33674810|gb|CF303049.1|CF303049
genomic: CCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAGgtgacttctt ... gcaatggcagATGTACAATGGAGT
EST: CCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAG ATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATCEST: gi|33675845|gb|CF304084.1|CF304084
genomic: CCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAGgtgacttctt ... gcaatggcagATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATC
EST: CCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAG ATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATCEST: gi|33676489|gb|CF304728.1|CF304728
genomic: CCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAGgtgacttctt ... gcaatggcagATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATC
EST: CCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAG ATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATC
genomic: CCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAGgtgacttctt ... gcaatggcagATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATC
tcattttcttttttcctctgtaaaacttgtgttcttggcctgattgcaatggcagATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATCTTTGCACCCATCGATGCATCGTTCAGTGATGATTCTCCGCTGCTGCCTT
gcctgat putative branch site (score: 5)
ttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacttcttgattcatgaaacttatcaccagttgaagaatcattttcttttttcctctgtaaaacttgtgttcttggcctgattgcaatggcagATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATCTTTGCACCCATCGATGCATCGTTCAGTGATGATTCTCCGCTGCTGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC