1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cagaaaggaaaaataatttttggccctcttctgggtttcttctggtcggaatattcagtttttatggtgaatggttcatgatcatagtgtttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCAT
species | Oryza sativa |
transcript | LOC_Os06g50120.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCAEST: gi|88964517|gb|CI055213.1|CI055213
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCAEST: gi|55413904|gb|CV726280.1|CV726280
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCAEST: gi|88835659|gb|CI370764.1|CI370764
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAGTAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCAEST: gi|88448338|gb|CI555193.1|CI555193
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCAEST: gi|86603159|gb|CI357523.1|CI357523
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: CTTGCTTTTTCTCATTGTTGCTGGAGTCAGTAGCAATAATAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCAEST: gi|86251814|gb|CI019006.1|CI019006
genomic: CTTGCTTTTTCTCATTGTTGCTGGAGTCA-TAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCAEST: gi|89185473|gb|CI051801.1|CI051801
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCAEST: gi|88260688|gb|CI362981.1|CI362981
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCAEST: gi|88964764|gb|CI084762.1|CI084762
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
tcggaatattcagtttttatggtgaatggttcatgatcatagtgtttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCAT
tttcact CT-rich tract
atattcagtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaaaggaaaaataatttttggccctcttctgggtttcttctggtcggaatattcagtttttatggtgaatggttcatgatcatagtgtttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCAT
- - - - aaaaata
- - - - - - - - - - - - - -cttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatg