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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagaaaggaaaaataatttttggccctcttctgggtttcttctggtcggaatattcagtttttatggtgaatggttcatgatcatagtgtttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCAT

Basic information

species Oryza sativa
transcript LOC_Os06g50120.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88964764|gb|CI084762.1|CI084762
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|88964517|gb|CI055213.1|CI055213
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|86881114|gb|CI339292.1|CI339292
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|88260688|gb|CI362981.1|CI362981
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|86603159|gb|CI357523.1|CI357523
EST:     CTTGCTTTTTCTCATTGTTGCTGGAGTCAGTAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CTTGCTTTTTCTCATTGTTGCTGGAGTCA-TAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|55413904|gb|CV726280.1|CV726280
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|88448338|gb|CI555193.1|CI555193
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|86497255|gb|CI139888.1|CI139888
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|58675298|gb|CK063985.1|CK063985
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|86251814|gb|CI019006.1|CI019006
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|88835659|gb|CI370764.1|CI370764
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAGTAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|86427669|gb|CI072766.1|CI072766
EST:     CCTTGCTTTTTCTCACTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|89185473|gb|CI051801.1|CI051801
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
EST: gi|3107012|gb|D42744.1|D42744
EST:     CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG                         ATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA
genomic: CCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGgtgagtgctt ... ttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggaatattcagtttttatggtgaatggttcatgatcatagtgtttcactgcagATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCAT
                                            tttcact  CT-rich tract
     atattcagtttttat  TA-rich tract