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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaacttgcactgaatctactatttccatctagcatactgtttagttgcttaatatctaaattcatcattttcatttcattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG

Basic information

species Oryza sativa
transcript LOC_Os06g49110.3
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49110.3 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA06G12110.1 (Glycine max), 3'ss of exon 9
----gtatggaacttgcactgaatctactatttccatctagcatactgtttagttgcttaatatctaaatt---catcattttcatttcatt---ctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTA--GAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG
    || |     |   | ||||  |||||||   || ||  ||    ||||  |  || ||   |   ||   ||| | | |    |   |   |  |||||| ||||||||||||||||| |||||||| || ||   |  || |     |  |||||  | ||||||||||| |||||  ||
gtatgtgtcatcttgaaattgaacttactattat-atatacaatcagttttacattattgattcttggtttgctcattaatctggcctggctgaacaaaagttatcagatgaacccagctaattacagagAGGCTCTGTGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTG

upper sequence: LOC_Os06g49110.3 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA04G42670.1 (Glycine max), 3'ss of exon 10
----gtatggaacttgcactgaatctactatt-tccatctagcatactgtttagttgcttaatatc--taaattcatcattttcatttcatt---ctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG
    || |     |   | ||||  ||||||| |  |  ||    | | ||   ||  | | | |   |    |||| | | |    |   |   |  |||||| ||||||||||||||||| |||||||| || ||    || |     |  |||||  | ||||||||||| |||||  ||
gtatgtgtcatcttgaaattgaacttactattatatacgtaat-cagttttacattattgattgttggtttgctcattaatctggcctggctgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29685228|gb|CB681503.1|CB681503
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|313079584|gb|HO213142.1|HO213142
EST:     CGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29645009|gb|CB650016.1|CB650016
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29619412|gb|CB624424.1|CB624424
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29624059|gb|CB629070.1|CB629070
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29624058|gb|CB629069.1|CB629069
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29645159|gb|CB650166.1|CB650166
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29661435|gb|CB657710.1|CB657710
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29617547|gb|CB622559.1|CB622559
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29629261|gb|CB634272.1|CB634272
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29624061|gb|CB629072.1|CB629072
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29615587|gb|CB620599.1|CB620599
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29641825|gb|CB646832.1|CB646832
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29624057|gb|CB629068.1|CB629068
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29621569|gb|CB626580.1|CB626580
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29619109|gb|CB624121.1|CB624121
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29619316|gb|CB624328.1|CB624328
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|27577435|gb|CB000130.1|CB000130
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29660274|gb|CB656549.1|CB656549
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|38471437|gb|CF955568.1|CF955568
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|33680655|gb|CF308894.1|CF308894
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29621570|gb|CB626581.1|CB626581
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29688150|gb|CB684425.1|CB684425
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|15852419|gb|BI805215.1|BI805215
EST:     TGGATTCAAATCCAAGATTGTGGGGTACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: TGGATTCAAATCCAAGATT-TGGGG-ACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|25806864|gb|CA762825.1|CA762825
EST:     CATTCCGAGAAGCTTTGGATTCAAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CATTCCGAGAAGCTTTGGATTC-AAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|58601365|gb|CK011893.1|CK011893
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29666982|gb|CB663257.1|CB663257
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|27554454|gb|CA998354.1|CA998354
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|8528033|gb|AU092848.1|AU092848
EST:     AAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: AAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29688149|gb|CB684424.1|CB684424
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29624056|gb|CB629067.1|CB629067
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|86251556|gb|CI016845.1|CI016845
EST:     ATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: ATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|9788971|gb|BE530981.1|BE530981
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCTAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCT
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCT
EST: gi|29616371|gb|CB621383.1|CB621383
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29660428|gb|CB656703.1|CB656703
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|86493942|gb|CI136575.1|CI136575
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|396941280|gb|HO188489.1|HO188489
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29624060|gb|CB629071.1|CB629071
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29655803|gb|CB652078.1|CB652078
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29688151|gb|CB684426.1|CB684426
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29679003|gb|CB675278.1|CB675278
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29629260|gb|CB634271.1|CB634271
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29672091|gb|CB668366.1|CB668366
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
EST: gi|29613358|gb|CB618371.1|CB618371
EST:     CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC                         TTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC
genomic: CCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaact ... cattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatactgtttagttgcttaatatctaaattcatcattttcatttcattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG
                      atctaaa  putative branch site (score: 3)
                                    ttttcatttcattct  putative PPT
                 ttaatatctaaattca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggaacttgcactgaatctactatttccatctagcatactgtttagttgcttaatatctaaattcatcattttcatttcattctgaagTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT