1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcatgaagttctcacttccttgtgcccatgaaagcggatctgttagttacatttacattcacaatctgtgttctataatgatcctctctcaatctctcagGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTACCATGAGCAGTGAAGATGCATATG
species | Oryza sativa |
transcript | LOC_Os06g43560.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAGATCTTGTGACGACATCAGACAATAGAATAAGTTTGCTTGTTGCTGAG GCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATEST: gi|29689587|gb|CB685862.1|CB685862
genomic: TAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGgtaatgtttt ... aatctctcagGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGAT
EST: TAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAG GCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATEST: gi|29684587|gb|CB680862.1|CB680862
genomic: TAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGgtaatgtttt ... aatctctcagGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGAT
EST: TAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAG GCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGAT
genomic: TAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGgtaatgtttt ... aatctctcagGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGAT
gttacatttacattcacaatctgtgttctataatgatcctctctcaatctctcagGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTACCATGAGCAGTGAAGATGCATATG
tcctctctcaatctct CT-rich tract
atttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgaagttctcacttccttgtgcccatgaaagcggatctgttagttacatttacattcacaatctgtgttctataatgatcctctctcaatctctcagGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTACCATGAGCAGTGAAGATGCATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-catgaag
- - - - - - - - - cttgtgc
- - - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - - - - tctgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcac