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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcaatctttcatatatagagagctcctaattctgttttcctcgtacatctatctgcatttcatgagtgagctgagcctaatttttttcattctctcctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCATGAGGTTACCAAGACAAAGTGAGAGTGTTGGAGACATTCCTATCATCAT

Basic information

species Oryza sativa
transcript LOC_Os06g35540.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86837409|gb|CI347838.1|CI347838
EST:     CGCTTGACAAAAGAGTTCCAAATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86426025|gb|CI071122.1|CI071122
EST:     CGCTTGACAAAAGAGTTCCANATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCNATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88960529|gb|CI006490.1|CI006490
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86863175|gb|CI344894.1|CI344894
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86415209|gb|CI069612.1|CI069612
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88245015|gb|CI244864.1|CI244864
EST:     CGCTTGACAAAAGAGTTCCAAATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88838733|gb|CI376271.1|CI376271
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86431905|gb|CI085516.1|CI085516
EST:     CGCTTGACAAAAGAGTTCCAGATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGCAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86490890|gb|CI133523.1|CI133523
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86521313|gb|CI161519.1|CI161519
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCCAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|89163281|gb|CI100171.1|CI100171
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88261103|gb|CI364679.1|CI364679
EST:     TAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTTCCTATCT-GCTAATGCTATTCA
genomic: TAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88955714|gb|CI092003.1|CI092003
EST:     CGCTTGACAAAAGAGTTCCANATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88982929|gb|CI250533.1|CI250533
EST:     CGCTTGACAAAAGAGTTCCANATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88958600|gb|CI096116.1|CI096116
EST:     CGCTTGACAAAAGAGTTCCANATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88833344|gb|CI076825.1|CI076825
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|89182827|gb|CI045585.1|CI045585
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88955844|gb|CI092133.1|CI092133
EST:     CGCTTGACAAAAGAGTTCCAAATGTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86825766|gb|CI361880.1|CI361880
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86433145|gb|CI093488.1|CI093488
EST:     CGCTTGACAAAAGAGTTCCANATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86256015|gb|CI068464.1|CI068464
EST:     CGCTTGACAAAAGAGTTCCANATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88849517|gb|CI089425.1|CI089425
EST:     CGCTTGACAAAAGAGTTCCAAATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|89163554|gb|CI100444.1|CI100444
EST:     CGCTTGACAAAAGAGTTCCAGATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGTCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86428294|gb|CI074975.1|CI074975
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86895900|gb|CI316085.1|CI316085
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86855856|gb|CI271075.1|CI271075
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88525748|gb|CI452775.1|CI452775
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88471349|gb|CI408620.1|CI408620
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88245868|gb|CI245717.1|CI245717
EST:     CGCTTGACAAAAGAGTTCCAAATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88507917|gb|CI435423.1|CI435423
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|89163504|gb|CI100394.1|CI100394
EST:     CGCTTGACAAAAGAGTTCCANATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86822374|gb|CI357939.1|CI357939
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88247972|gb|CI247821.1|CI247821
EST:     CGCTTGACAAAAGAGTTCCAAATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86601803|gb|CI258479.1|CI258479
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|3760200|gb|C97458.1|C97458
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88245388|gb|CI245237.1|CI245237
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88250628|gb|CI348858.1|CI348858
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|89188646|gb|CI115895.1|CI115895
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88833851|gb|CI077332.1|CI077332
EST:     CGCTTGACAAAAGAGTTCCAAATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|86436545|gb|CI118267.1|CI118267
EST:     CGCTTGACAAAAGAGTTCCAAATCTACATGACTCGTAACGGGCGGATAAA                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88960356|gb|CI382234.1|CI382234
EST:     CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
EST: gi|88244076|gb|CI243198.1|CI243198
EST:     CGCTTGACAAAAGAGTTCCAAATCTACATGACTCGTAACGGGCGGATAAG                         CATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA
genomic: CGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 58 (downstream exon)
Score: 7

ATTGGAATGTTCTGCTACAGTGGTATGACACCTGAACAAGTCGATCGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactcaatc ... cctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCATGAGGTTACCAAGACAAAGTGAGAGTGTTGGAGACATTCCTATCATCAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgcatttcatgagtgagctgagcctaatttttttcattctctcctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCATGAGGTTACCAAGACAAAGTGAGAGTGTTGGAGACATTCCTATCATCAT
                        gcctaat  putative branch site (score: 7)
                         cctaatttttttcatt  CT-rich tract
                           taatttttttcattct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactcaatctttcatatatagagagctcctaattctgttttcctcgtacatctatctgcatttcatgagtgagctgagcctaatttttttcattctctcctccttcagCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCATGAGGTTACCAAGACAAAGTGAGAGTGTTGGAGACATTCCTATCATCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA