1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcaagcaaatactccctatgcgtgttccaaactagtatattgcaaccagttacggcccgattgcgcaatagacctaactctttttcttgctctgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAA
species | Oryza sativa |
transcript | LOC_Os06g35030.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTGCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|86498038|gb|CI140671.1|CI140671
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88199202|gb|CI199052.1|CI199052
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCTAAAGACACCGGTCCGGCCCCGTCCGCCCCGTGTGACGTEST: gi|87007992|gb|CI296970.1|CI296970
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTC-AAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGT
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88247552|gb|CI247401.1|CI247401
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|87025635|gb|CI250129.1|CI250129
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88217232|gb|CI217081.1|CI217081
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: GTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|29664696|gb|CB660971.1|CB660971
genomic: GTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTATGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88246608|gb|CI246457.1|CI246457
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88249302|gb|CI249151.1|CI249151
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|218500791|gb|FG960831.1|FG960831
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGEST: gi|29664748|gb|CB661023.1|CB661023
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCG
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|86593985|gb|CI260214.1|CI260214
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|87035568|gb|CI190190.1|CI190190
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: GCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88247664|gb|CI247513.1|CI247513
genomic: GCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: CATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|86495703|gb|CI138336.1|CI138336
genomic: CATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88243612|gb|CI244009.1|CI244009
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|29673490|gb|CB669765.1|CB669765
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88249620|gb|CI249469.1|CI249469
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|29637104|gb|CB642113.1|CB642113
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|396941304|gb|HO188513.1|HO188513
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|29664747|gb|CB661022.1|CB661022
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88236140|gb|CI235342.1|CI235342
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|38476666|gb|CF960799.1|CF960799
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88250150|gb|CI249999.1|CI249999
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: TTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|87022101|gb|CI259173.1|CI259173
genomic: TTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|86539456|gb|CI179662.1|CI179662
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCTTCAG GTTGAGCCCGTCAAAGACGCCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|86535072|gb|CI175278.1|CI175278
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88250034|gb|CI249883.1|CI249883
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: TGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|86417377|gb|CI031586.1|CI031586
genomic: TGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|29685221|gb|CB681496.1|CB681496
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|88238786|gb|CI238635.1|CI238635
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCEST: gi|5003290|gb|AU068439.1|AU068439
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
EST: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAG GGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
genomic: ATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGgcaagcaaat ... tgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTC
agttacggcccgattgcgcaatagacctaactctttttcttgctctgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAA
acctaac putative branch site (score: 18)
ctctttttcttgctct CT-rich tract
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcaaatactccctatgcgtgttccaaactagtatattgcaaccagttacggcccgattgcgcaatagacctaactctttttcttgctctgttctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC