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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaactattctgagcatgagatgaatggatcttttcataatttaaattctatttcaattgtattggtctgctgtgttctgacttctgactgagttccagcatttatttttaatattttagATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTC

Basic information

species Oryza sativa
transcript LOC_Os06g08400.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g08400.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 9
gtgagaactattctgagcatgagatgaatggatcttttcataatttaaattctatttcaattgtattggtctgctgtgttctgacttctgactgagttccagcatttatttttaatattttagATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTC---
||||||  | |||  | ||  |  || ||   ||||| | ||  || ||||||  |||  ||  | |  | | || | | |||  |||||| ||||       | | || ||      || ||||| ||   |||||||||||||||||||| ||| |||||| ||||||||| |||||||||||| |||| || ||||||||||||||||||||||| ||||   
gtgagagtttttccaaacaccaattggattattctttcctta--tttaattcttgttctgttccaattttgttct-tctgctgcattctgaatgag-------actgatgtt------ttcagATACTG---AGACCAAGAATGGCTGGAAACAAAATTATGGGAATGATAACAGAGCCATATAGGCTGACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgctgtgttctgacttctgactgagttccagcatttatttttaatattttagATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTC
                                agcatttatttttaat  TA-rich tract