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gtaaggcccatcaggatcccaagtattaatttagcctttttcatagtccttccgagaaatacatgcaaatgattggtctgtaatgtgttgcagATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA
species | Oryza sativa |
transcript | LOC_Os05g50980.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAACCACTATTCAACAAGACCAGGAGATTCTAG ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAEST: gi|86868384|gb|CI334172.1|CI334172
genomic: CAACCACTATTCAACAAGACCAGGAGATTCTAGgtaaggccca ... tgtgttgcagATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA
EST: GATGCTGGAGTCCTTTTCAACCACTATTCAACAAGACCAGGAGATTCTAG ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAEST: gi|38470611|gb|CF954742.1|CF954742
genomic: GATGCTGGAGTCCTTTTCAACCACTATTCAACAAGACCAGGAGATTCTAGgtaaggccca ... tgtgttgcagATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA
EST: GATGCTGGAGTCCTTTTCAACCACTATTCAACAAGACCAGGAGATTCTAG ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAEST: gi|88223679|gb|CI223528.1|CI223528
genomic: GATGCTGGAGTCCTTTTCAACCACTATTCAACAAGACCAGGAGATTCTAGgtaaggccca ... tgtgttgcagATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA
EST: GATGCTGGAGTCCTTTTCAACCACTATTCAACAAGACCAGGAGATTCTAG ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAEST: gi|86504726|gb|CI147359.1|CI147359
genomic: GATGCTGGAGTCCTTTTCAACCACTATTCAACAAGACCAGGAGATTCTAGgtaaggccca ... tgtgttgcagATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA
EST: GATGCTGGAGTCCTTTTCAACCACTATTCAACAAGACCAGGAGATTCTAG ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA
genomic: GATGCTGGAGTCCTTTTCAACCACTATTCAACAAGACCAGGAGATTCTAGgtaaggccca ... tgtgttgcagATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA
tttcatagtccttccgagaaatacatgcaaatgattggtctgtaatgtgttgcagATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA
aaatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcccatcaggatcccaagtattaatttagcctttttcatagtccttccgagaaatacatgcaaatgattggtctgtaatgtgttgcagATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC