1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacactcctggctctattctgcatttccttcaattgatagagttttgctctctcttggaatgtgcttcatccagcattttgtgttgtactatgaacgttgtacccttaaggtcccatacatttatttccaaaggttcaatttgtactcaaatggtttgcacactgtaatttaacaggaatttttttttttttttgcagATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAG
species | Oryza sativa |
transcript | LOC_Os05g38270.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCATGCAAGAGGTGTTTCGTGTGGAGCCCGACACAGTGCAGTCATAACAG ATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAGEST: gi|9865082|gb|AU100832.1|AU100832
genomic: TCATGCAAGAGGTGTTTCGTGTGGAGCCCGACACAGTGCAGTCATAACAGgtacactcct ... ttttttgcagATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAG
EST: CATGCCAAGAGGTGTTTCGTGTGGAGCCCNACACAGTGCAGTCATAACAG ATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAGEST: gi|218498039|gb|FG964220.1|FG964220
genomic: CATG-CAAGAGGTGTTTCGTGTGGAGCCCGACACAGTGCAGTCATAACAGgtacactcct ... ttttttgcagATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAG
EST: GCATGCAAGAGGTGTTTCGTGTGGAGCCCGACACAGTGCAGTCATAACAG ATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAGEST: gi|2311383|gb|C27538.1|C27538
genomic: TCATGCAAGAGGTGTTTCGTGTGGAGCCCGACACAGTGCAGTCATAACAGgtacactcct ... ttttttgcagATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAG
EST: TCATGCAAGAGGTGTTTCGTGTGGAGCCCGACACAGTGCAGTCATAACAG ATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAG
genomic: TCATGCAAGAGGTGTTTCGTGTGGAGCCCGACACAGTGCAGTCATAACAGgtacactcct ... ttttttgcagATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAG
tactcaaatggtttgcacactgtaatttaacaggaatttttttttttttttgcagATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAG
atttaac putative branch site (score: 19)
tttttttttttttttg putative PPT
tgtaatttaacaggaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactcctggctctattctgcatttccttcaattgatagagttttgctctctcttggaatgtgcttcatccagcattttgtgttgtactatgaacgttgtacccttaaggtcccatacatttatttccaaaggttcaatttgtactcaaatggtttgcacactgtaatttaacaggaatttttttttttttttgcagATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG