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...ttagtgttgcatttacactttatttgttttctttttgtatcgcatacttttgtctccttatgtctggcagactactgaagtgtttggaacctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCTGGAGAGGAGGAAAATATGCCTCTAGTGACTAAAGCTCTCCCACACAGGC
species | Oryza sativa |
transcript | LOC_Os05g33810.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAA AGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCTEST: gi|58607244|gb|CK035277.1|CK035277
genomic: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAAgtaagtgatc ... ctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCT
EST: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAA AGTACTGGAACCAGTGGAGAACATGATTTGCACACAACCAATGCAGCTTCTEST: gi|29673310|gb|CB669585.1|CB669585
genomic: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAAgtaagtgatc ... ctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCT
EST: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAA AGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCTEST: gi|88253547|gb|CI352173.1|CI352173
genomic: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAAgtaagtgatc ... ctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCT
EST: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAA AGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCTEST: gi|25805269|gb|CA761230.1|CA761230
genomic: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAAgtaagtgatc ... ctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCT
EST: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAA AGTACTGGAACCAGTGGAGAACATGATTTGCACACAACCAATGCAGCTTCTEST: gi|29632417|gb|CB637426.1|CB637426
genomic: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAAgtaagtgatc ... ctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCT
EST: ATTATGATCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAA AGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCTEST: gi|86493572|gb|CI136205.1|CI136205
genomic: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAAgtaagtgatc ... ctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCT
EST: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAA AGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCTEST: gi|88263789|gb|CI366690.1|CI366690
genomic: ATTATGCTCCAAACCAGCCAAAGTTGGGCATTTCTGTGCCACTTGCTGAAgtaagtgatc ... ctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCT
EST: TTGGGCATTTCTG-GCCACTTGCTGAA AGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCT
genomic: TTGGGCATTTCTGTGCCACTTGCTGAAgtaagtgatc ... ctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCT
acttttgtctccttatgtctggcagactactgaagtgtttggaacctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCTGGAGAGGAGGAAAATATGCCTCTAGTGACTAAAGCTCTCCCACACAGGC
cctttctgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtgttgcatttacactttatttgttttctttttgtatcgcatacttttgtctccttatgtctggcagactactgaagtgtttggaacctttctgcagAGTACTGGAACCAGTGGAGAACATGATTTGCACTCAACCAATGCAGCTTCTGGAGAGGAGGAAAATATGCCTCTAGTGACTAAAGCTCTCCCACACAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- -gtgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg