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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattaacagtgcggatcttcttccatattgagtaaaaatctatgatattatatgcaagaaattagatgtatatcctatctgtatgtattcttcgcagGTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGG

Basic information

species Oryza sativa
transcript LOC_Os05g28200.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g28200.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G162672_T02 (Zea mays), 3'ss of exon 9
gta-aattaacagtgcggatcttcttccatattgagtaaaaatctatgatattatatgcaagaaattagatgtatatcctatctgtatg---tattcttcgcagGTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGG
|||  ||  ||  ||| ||| |   | ||| ||| | ||| |  | || | ||  |||| |  | | | || |  |    |  |  | |   | || || ||||||||||||||||||| ||||||||||| ||||| || |||||  ||||| ||||| ||||||| ||||||||||||
gtatgatctacgttgccgatttctcttcatgttgcgcaaacaattttggttttg-atgctacca-tcatatatgcactagacttaaagggttttttttttgcagGTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86906508|gb|CI294631.1|CI294631
EST:     GGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCCTG                         GTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCT
genomic: GGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCCTGgtaaattaac ... ttcttcgcagGTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCT
EST: gi|86596619|gb|CI286532.1|CI286532
EST:     GGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCCTG                         GTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCT
genomic: GGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCCTGgtaaattaac ... ttcttcgcagGTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCT
EST: gi|86907178|gb|CI292792.1|CI292792
EST:     GGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCCTG                         GTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCT
genomic: GGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCCTGgtaaattaac ... ttcttcgcagGTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatattatatgcaagaaattagatgtatatcctatctgtatgtattcttcgcagGTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGG
                                           tattcttc  CT-rich tract
                aaattagatgtatat  TA-rich tract