1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaagcaaacaaactttatgttctttatatttggtatggtgtatgctatgttcagtttttatccacttctctgaacttctttgttcaatttgtacaggaagGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG
species | Oryza sativa |
transcript | LOC_Os05g08980.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTG GCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGEST: gi|218505037|gb|FG952955.1|FG952955
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGgtatgagcct ... gtacaggaagGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTG GAAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGEST: gi|86414853|gb|CI069256.1|CI069256
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGgtatgagcct ... gtacaggaagG----CTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGGAAGEST: gi|29663313|gb|CB659588.1|CB659588
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCT----Ggtatgagcct ... gtacagg
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTG GAAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGEST: gi|29674385|gb|CB670660.1|CB670660
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGgtatgagcct ... gtacaggaagG----CTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGGAAGEST: gi|88962073|gb|CI097226.1|CI097226
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCT----Ggtatgagcct ... gtacagg
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGGAAGEST: gi|33684852|gb|CF313091.1|CF313091
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCT----Ggtatgagcct ... gtacagg
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGGAAGEST: gi|29671281|gb|CB667556.1|CB667556
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCT----Ggtatgagcct ... gtacagg
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTG GAAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGEST: gi|29688958|gb|CB685233.1|CB685233
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGgtatgagcct ... gtacaggaagG----CTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGGAAGEST: gi|33684851|gb|CF313090.1|CF313090
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCT----Ggtatgagcct ... gtacagg
EST: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTG GAAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG
genomic: ACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCTGgtatgagcct ... gtacaggaagG----CTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG
tatgttcagtttttatccacttctctgaacttctttgttcaatttgtacaggaagGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG
agtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcaaacaaactttatgttctttatatttggtatggtgtatgctatgttcagtttttatccacttctctgaacttctttgttcaatttgtacaggaagGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - -aaacaaa
- - - - - - - - -tgttctt
- - - - - - - - - - - - - - - tggtatg
- - - - - - - - - - - - - - - - - - - tgtatgc