1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagcatctgtccttaccagttgactttaacctgcaattaaacttgtatcctccattatatctttcatacattgtgtgactcaagatagattttgcacgttacctatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAACTGTTCGACATCCGCTGCTGAGCAACAATATGAGCAGCGAAGGGTTGT
species | Oryza sativa |
transcript | LOC_Os05g05160.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTAAAATCACAGGATACTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GGGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAEST: gi|88828566|gb|CI073436.1|CI073436
genomic: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
EST: TAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAEST: gi|89177111|gb|CI043614.1|CI043614
genomic: TAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
EST: AAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAEST: gi|58685382|gb|CK074069.1|CK074069
genomic: AAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
EST: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAEST: gi|86898584|gb|CI292404.1|CI292404
genomic: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
EST: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAEST: gi|58668494|gb|CK057180.1|CK057180
genomic: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
EST: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAEST: gi|38477994|gb|CF962127.1|CF962127
genomic: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
EST: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAEST: gi|58690737|gb|CK079424.1|CK079424
genomic: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
EST: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAEST: gi|58686748|gb|CK075435.1|CK075435
genomic: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
EST: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAEST: gi|58604748|gb|CK015276.1|CK015276
genomic: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
EST: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAG GTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
genomic: TCTAAAATCACAGGATTCTGCTTCAGTCGGTGCAAGCAGAATCCCTCAAGgttagcatct ... tatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTA
atctttcatacattgtgtgactcaagatagattttgcacgttacctatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAACTGTTCGACATCCGCTGCTGAGCAACAATATGAGCAGCGAAGGGTTGT
cctatcttcc CT-rich tract
atagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcatctgtccttaccagttgactttaacctgcaattaaacttgtatcctccattatatctttcatacattgtgtgactcaagatagattttgcacgttacctatcttccagGTGCTGCTGCAAGACCTGGTAAAGCAGTTGGTTCGGTGCTGCGTTACGGTAACTGTTCGACATCCGCTGCTGAGCAACAATATGAGCAGCGAAGGGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG