1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...atatatctaaccaagcatatggatttatctcatggaagcttgtctcagatgttaatatattacttaattctaatgctgttctgatttccttgctctccagGTTCCTAAGCTACTTGACAAACAAGGAGGGCAGTTGCTTGCTGTTGCACTACTTGTTTTCTCTCGAACTTGGATCTCAGACCGAATTGCTTCACTGAATG
species | Oryza sativa |
transcript | LOC_Os05g01700.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCCAAGGCCTCTGCCTGCCAGAGTAGCTGCAATGGTCAAAATATTG GTTCCTAAGCTACTTGACAAACAAGGAGGGCAGTTGCTTGCTGTTGCACTAEST: gi|29623923|gb|CB628934.1|CB628934
genomic: GCTTCCCAAGGCCTCTGCCTGCCAGAGTAGCTGCAATGGTCAAAATATTGgtatgctatg ... tgctctccagGTTCCTAAGCTACTTGACAAACAAGGAGGGCAGTTGCTTGCTGTTGCACTA
EST: GCTTCCCAAGGCCTCTGCCTGCCAGAGTAGCTGCAATGGTCAAAATATTG GTTCCTAAGCTACTTGACAAACAAGGAGGGCAGTTGCTTGCTGTTGCACTA
genomic: GCTTCCCAAGGCCTCTGCCTGCCAGAGTAGCTGCAATGGTCAAAATATTGgtatgctatg ... tgctctccagGTTCCTAAGCTACTTGACAAACAAGGAGGGCAGTTGCTTGCTGTTGCACTA
cagatgttaatatattacttaattctaatgctgttctgatttccttgctctccagGTTCCTAAGCTACTTGACAAACAAGGAGGGCAGTTGCTTGCTGTTGCACTACTTGTTTTCTCTCGAACTTGGATCTCAGACCGAATTGCTTCACTGAATG
tttccttgctctcc CT-rich tract
ttaatatattacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatctaaccaagcatatggatttatctcatggaagcttgtctcagatgttaatatattacttaattctaatgctgttctgatttccttgctctccagGTTCCTAAGCTACTTGACAAACAAGGAGGGCAGTTGCTTGCTGTTGCACTACTTGTTTTCTCTCGAACTTGGATCTCAGACCGAATTGCTTCACTGAATG
- - - - - ccaagca
- - - - - - - - - - - - - - - catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt