1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtctcttatctgtcatatttcctattatgtgattttatatggttcaattatggttgctcactgctgaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTACAATTCAGAAGTGTTCGGTGATGACAACTGGTACAAGACAGTAGTTTTA
species | Oryza sativa |
transcript | LOC_Os04g57210.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATEST: gi|29626709|gb|CB631720.1|CB631720
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGAT
EST: TTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|29663904|gb|CB660179.1|CB660179
genomic: TTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|157650648|gb|EX450282.1|EX450282
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|29663905|gb|CB660180.1|CB660180
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|29618214|gb|CB623226.1|CB623226
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|29626176|gb|CB631187.1|CB631187
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: AAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGGTAEST: gi|29679980|gb|CB676255.1|CB676255
genomic: -AAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: TTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|29624048|gb|CB629059.1|CB629059
genomic: TTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|58589122|gb|CF987430.1|CF987430
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCGGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|29671067|gb|CB667342.1|CB667342
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|29663603|gb|CB659878.1|CB659878
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTAEST: gi|29679981|gb|CB676256.1|CB676256
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
EST: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGT GCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
genomic: GAAAGGTTCAAGACTGCAGAAATCCTTTTCCAGCCCCAGATTGGAGGAGTgtatgtctct ... gaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTA
cctattatgtgattttatatggttcaattatggttgctcactgctgaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTACAATTCAGAAGTGTTCGGTGATGACAACTGGTACAAGACAGTAGTTTTA
tgctgac putative branch site (score: 2)
tatgtgattttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctcttatctgtcatatttcctattatgtgattttatatggttcaattatggttgctcactgctgaccttgcagGCGTGCTATGGGCTTGCATAAAGCAGTATCTCTGTGTATGGATCACTGCTACAATTCAGAAGTGTTCGGTGATGACAACTGGTACAAGACAGTAGTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT