1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttggtttacggtgtttttctattttatactttgtttttagttaagctttaccttttcgtttcttcccatctgtccaaagaggataagcacatagaaaagcactgtatacgtgctcattattattatgtttcaatttgcagACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGTGTAAAAGGTCCAGAATTGATTAACATGTATGTTGGAGAATCGGAGAAGA
species | Oryza sativa |
transcript | LOC_Os04g52690.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAG ACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGTEST: gi|58674677|gb|CK063364.1|CK063364
genomic: TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGgttggtttac ... caatttgcagACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT
EST: TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAG ACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGTEST: gi|27576352|gb|CA999046.1|CA999046
genomic: TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGgttggtttac ... caatttgcagACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT
EST: TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAG ACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT
genomic: TGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGgttggtttac ... caatttgcagACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT
agcacatagaaaagcactgtatacgtgctcattattattatgtttcaatttgcagACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGTGTAAAAGGTCCAGAATTGATTAACATGTATGTTGGAGAATCGGAGAAGA
tcattattattatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtttacggtgtttttctattttatactttgtttttagttaagctttaccttttcgtttcttcccatctgtccaaagaggataagcacatagaaaagcactgtatacgtgctcattattattatgtttcaatttgcagACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGTGTAAAAGGTCCAGAATTGATTAACATGTATGTTGGAGAATCGGAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA