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gttagttcaattggtaaatgctactatgaataccaattttgtggctctgtggagtacaaaataatcccactggttttgtgcgttaactatgttttacttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAAAG
species | Oryza sativa |
transcript | LOC_Os04g52500.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|27576266|gb|CA998960.1|CA998960
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|218500790|gb|FG960830.1|FG960830
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|29614249|gb|CB619262.1|CB619262
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|86493449|gb|CI136082.1|CI136082
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: TCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|33799965|gb|CF325850.1|CF325850
genomic: TCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|29614251|gb|CB619264.1|CB619264
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|29645191|gb|CB650198.1|CB650198
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|29629570|gb|CB634579.1|CB634579
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: CCAATTTCAAATCTCAGTGACCT-TTGGTATACTCAGG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCEST: gi|218497772|gb|FG957253.1|FG957253
genomic: CCAATTTCAAATCTCAGTGACCTCTT-GTATACTCA-Ggttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGC
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|29644324|gb|CB649331.1|CB649331
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|29614208|gb|CB619221.1|CB619221
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: ATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAEST: gi|29665283|gb|CB661558.1|CB661558
genomic: ATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
EST: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAG GGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
genomic: GGAGTGAACACCATCCAATTTCAAATCTCAGTGACCTCTTGTATACTCAGgttagttcaa ... cttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCA
gagtacaaaataatcccactggttttgtgcgttaactatgttttacttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAAAG
cgttaac putative branch site (score: 16)
ttttacttc putative PPT
ttaactatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttcaattggtaaatgctactatgaataccaattttgtggctctgtggagtacaaaataatcccactggttttgtgcgttaactatgttttacttcattcagGGCAACTACATCTGTGTTGATGGTGATGGATCTGTCCCTGTAGAATCAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG