1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actacgattcatttgtgtaatgtgctcgactcaaatctatttaatgatgcaggtgtcatttcatgatctcacatggtgtatcttaatcaaagttgtgtagGGGCACTCAGTAGCAAGTGACTTTGTAACAAGCTCATCTAAATGCTGTGGCTTAGCCGTGAAGCTCTTGATCAGACAATATTGAATGTTGCTGATAAGGT
species | Oryza sativa |
transcript | LOC_Os04g45040.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCAATCTCTGGAAGTAATAAGATAACCTGTGTAAATATCAGCTCATCAG TEST: gi|58663869|gb|CK052555.1|CK052555
genomic: GCCAATCTCTGGAAGTAATAAGATAACCTGTGTAAATATCAGCTCATCAGgtacctacac ... agttgtgtag-
EST: GCCAATCTCTGGAAGTAATAAGATAACCTGTGTAAATATCAGCTCATCAG TEST: gi|58663869|gb|CK052555.1|CK052555
genomic: GCCAATCTCTGGAAGTAATAAGATAACCTGTGTAAATATCAGCTCATCAGgtacctacac ... agttgtgtag-
EST: GCCAATCTCTGGAAGTAATAAGATAACCTGTGTAAATATCAGCTCATCAG TEST: gi|89187094|gb|CI047161.1|CI047161
genomic: GCCAATCTCTGGAAGTAATAAGATAACCTGTGTAAATATCAGCTCATCAGgtacctacac ... agttgtgtag-
EST: GCCAATCTCTGGAAGTAATAAGATAACCTGTGTAAATATCAGCTCATCAG GGGCACTCAGTAGCAAGTGACTTTGTAACAAGCTCATCTAAATGCTGTGGCEST: gi|88490863|gb|CI428135.1|CI428135
genomic: GCCAATCTCTGGAAGTAATAAGATAACCTGTGTAAATATCAGCTCATCAGgtacctacac ... agttgtgtagGGGCACTCAGTAGCAAGTGACTTTGTAACAAGCTCATCTAAATGCTGTGGC
EST: TGTAAATATCAGCTCATCAG GGGCACTCAGTAGCAAGTGACTTTGTAACAAGCTCATCTAAATGCTGTGGC
genomic: TGTAAATATCAGCTCATCAGgtacctacac ... agttgtgtagGGGCACTCAGTAGCAAGTGACTTTGTAACAAGCTCATCTAAATGCTGTGGC
gatgcaggtgtcatttcatgatctcacatggtgtatcttaatcaaagttgtgtagGGGCACTCAGTAGCAAGTGACTTTGTAACAAGCTCATCTAAATGCTGTGGCTTAGCCGTGAAGCTCTTGATCAGACAATATTGAATGTTGCTGATAAGGT
tcttaat putative branch site (score: 3)
tatcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actacgattcatttgtgtaatgtgctcgactcaaatctatttaatgatgcaggtgtcatttcatgatctcacatggtgtatcttaatcaaagttgtgtagGGGCACTCAGTAGCAAGTGACTTTGTAACAAGCTCATCTAAATGCTGTGGCTTAGCCGTGAAGCTCTTGATCAGACAATATTGAATGTTGCTGATAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - tcatttg
- - - - - - - - - aatgtgc
- - - - - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgg