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...gccttctgcagagtccggaataaatatattccttcatctaaaaatgcacgcccataaattaattatttcagtttttgagtcgtggtatatgattttgtagAGCGGCAGCCAAATGATCCGCCGCTTGAATGGCAAACAAGAACTCGGATTGCGCTGGGATCTGCCAGAGGATTGTCCTACTTGCACGACCATTGTGATCC
species | Oryza sativa |
transcript | LOC_Os04g38480.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACTTGTCTATCCCTACATGGCTAATGGGAGTGTCGCATCACGATTGCGAG AGCGGCAGCCAAATGATCCGCCGCTTGAATGGCAAACAAGAACTCGGATTGEST: gi|58693053|gb|CK081740.1|CK081740
genomic: ACTTGTCTATCCCTACATGGCTAATGGGAGTGTCGCATCACGATTGCGAGgtgccttaat ... gattttgtagAGCGGCAGCCAAATGATCCGCCGCTTGAATGGCAAACAAGAACTCGGATTG
EST: ACTTGTCTATCCCTACATGGCTAATGGGAGTGTCGCATCACGATTGCGAG AGCGGCAGCCAAATGATCCGCCGCTTGAATGGCAAACAAGAACTCGGATTGEST: gi|87006023|gb|CI289440.1|CI289440
genomic: ACTTGTCTATCCCTACATGGCTAATGGGAGTGTCGCATCACGATTGCGAGgtgccttaat ... gattttgtagAGCGGCAGCCAAATGATCCGCCGCTTGAATGGCAAACAAGAACTCGGATTG
EST: ACTTGTCTATCCCTACATGGCTAATGGGAGTGTCGCATCACGATTGCGAG AGCGGCAGCCAAATGATCCGCCGCTTGAATGGCAAACAAGAACTCGGATTG
genomic: ACTTGTCTATCCCTACATGGCTAATGGGAGTGTCGCATCACGATTGCGAGgtgccttaat ... gattttgtagAGCGGCAGCCAAATGATCCGCCGCTTGAATGGCAAACAAGAACTCGGATTG
gcacgcccataaattaattatttcagtttttgagtcgtggtatatgattttgtagAGCGGCAGCCAAATGATCCGCCGCTTGAATGGCAAACAAGAACTCGGATTGCGCTGGGATCTGCCAGAGGATTGTCCTACTTGCACGACCATTGTGATCC
aattaat putative branch site (score: 3)
ataaattaattatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttctgcagagtccggaataaatatattccttcatctaaaaatgcacgcccataaattaattatttcagtttttgagtcgtggtatatgattttgtagAGCGGCAGCCAAATGATCCGCCGCTTGAATGGCAAACAAGAACTCGGATTGCGCTGGGATCTGCCAGAGGATTGTCCTACTTGCACGACCATTGTGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- cttctgc
- - - - - - - - -gaataaa
- - - - - - - - - - - - - - - -cttcatc
- - - - - - - - - - - - - - - - - - - - - - tgcacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttttg