1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggcttttaagggggaaaatggcattgcttgcttcttttatggtttctattttcctgaatcctgagtcctgacgcttatcatgtcttcatccttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAGTGAGTGCAAGAGATTTTACCGGATTTTCCACAGCCGTTCCTTCACCAC
species | Oryza sativa |
transcript | LOC_Os04g35700.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|29622196|gb|CB627207.1|CB627207
genomic: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: TGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|218489615|gb|FG967806.1|FG967806
genomic: TGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|29666846|gb|CB663121.1|CB663121
genomic: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|313081071|gb|HO213657.1|HO213657
genomic: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|58668178|gb|CK056864.1|CK056864
genomic: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|109974311|gb|DT806838.1|DT806838
genomic: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|29628152|gb|CB633163.1|CB633163
genomic: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: TGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|29629744|gb|CB634753.1|CB634753
genomic: TGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: AGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|29666845|gb|CB663120.1|CB663120
genomic: AGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAEST: gi|29639138|gb|CB644147.1|CB644147
genomic: CTGGTGCACTGAGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
EST: AGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACG TCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
genomic: AGAAATGCGTTTGCACCAGCAGATGGGACGCATACAACGgtatactttt ... cttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGA
ctattttcctgaatcctgagtcctgacgcttatcatgtcttcatccttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAGTGAGTGCAAGAGATTTTACCGGATTTTCCACAGCCGTTCCTTCACCAC
tcctgac putative branch site (score: 28)
tcttcatccttgtt putative PPT
ttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcttttaagggggaaaatggcattgcttgcttcttttatggtttctattttcctgaatcctgagtcctgacgcttatcatgtcttcatccttgttgcagTCCAACAGGGAGTTCTCAAGGAAAAGTATCACTCCCCTAAAGGATATAGGAGTGAGTGCAAGAGATTTTACCGGATTTTCCACAGCCGTTCCTTCACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcatc