1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gagtgagataacactacatccctgcataagtgagataacgccacatcccctgggcagttcaataatttcagtcagtaccaatggttgatatgacttgcagGGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTCTCAATCCTGCGGCCAACTACATCACGGGACAG
species | Oryza sativa |
transcript | LOC_Os04g30760.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAACTTGGAGAGGATCTTGAGAAGAAAATCTTGTCAACCATCCCATTAG GGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTCEST: gi|86546341|gb|CI186547.1|CI186547
genomic: TGAACTTGGAGAGGATCTTGAGAAGAAAATCTTGTCAACCATCCCATTAGgtacgtgtgt ... tgacttgcagGGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTC
EST: ATCTTGAGAAGTAAATCTTGTCAACTATCCCATTAG GGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTCEST: gi|88979780|gb|CI026087.1|CI026087
genomic: ATCTTGAGAAGAAAATCTTGTCAACCATCCCATTAGgtacgtgtgt ... tgacttgcagGGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTC
EST: TGAACTTGGAGAGGATCTTGAGAAGAAAATCTTGTCAACCATCCCATTAG GGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTCEST: gi|88218998|gb|CI220558.1|CI220558
genomic: TGAACTTGGAGAGGATCTTGAGAAGAAAATCTTGTCAACCATCCCATTAGgtacgtgtgt ... tgacttgcagGGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTC
EST: TGAACTTGGAGAGGATCTTGAGAAGAAAATCTTGTCAACCATCCCATTAG GGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTC
genomic: TGAACTTGGAGAGGATCTTGAGAAGAAAATCTTGTCAACCATCCCATTAGgtacgtgtgt ... tgacttgcagGGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTC
tcccctgggcagttcaataatttcagtcagtaccaatggttgatatgacttgcagGGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTCTCAATCCTGCGGCCAACTACATCACGGGACAG
ggttgat putative branch site (score: 11)
ttcaataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtgagataacactacatccctgcataagtgagataacgccacatcccctgggcagttcaataatttcagtcagtaccaatggttgatatgacttgcagGGAGATATGGCAAACCAGAGGAGGTTGCTGGCTTGGTTGAGTTTTTGGCTCTCAATCCTGCGGCCAACTACATCACGGGACAG
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