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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtttgtcatttagataccgtgttcatctaggagtgtctctttggcggattgatgcggtagctcaccagtgcatgtttgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGAT

Basic information

species Oryza sativa
transcript LOC_Os03g64219.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88489736|gb|CI427008.1|CI427008
EST:     CTGAGGTGCAATACAANTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|88475411|gb|CI412682.1|CI412682
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|88489389|gb|CI426661.1|CI426661
EST:     TTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: TTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|88284862|gb|CI406308.1|CI406308
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|29671297|gb|CB667572.1|CB667572
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|88519032|gb|CI446686.1|CI446686
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|88840178|gb|CI079632.1|CI079632
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|88281896|gb|CI403292.1|CI403292
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|33681506|gb|CF309745.1|CF309745
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|88842564|gb|CI081820.1|CI081820
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|86418296|gb|CI032505.1|CI032505
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|88514108|gb|CI441614.1|CI441614
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
EST: gi|88840177|gb|CI079631.1|CI079631
EST:     CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG                         AGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGgtacagtttg ... tgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtctctttggcggattgatgcggtagctcaccagtgcatgtttgtggtgcagAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGAT
                           agctcac  putative branch site (score: 3)