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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcttacttgactttatcgtatttctcttttggttccttgctttgtatttgtcagttgatttccagttctttgcttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG

Basic information

species Oryza sativa
transcript LOC_Os03g63430.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g63430.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 9
gtattgcttacttgactttatcgtatttctcttttggttccttgctttgtatttgtcagttgatttccagttctttgcttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG
||| |||||||||   | ||| |  | |   | | | |   ||||||| |  |||||   | | | |    | || ||| | | | |||||||||||||||| || ||||||||||| ||| ||||| | |||||||| || ||||| || ||| |||| ||||||
gtactgcttactttg-tgtatggcctatagttgtagttattttgctttatggttgtccactaaat-ctgacttttcgctct-gcttagAATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG

upper sequence: LOC_Os03g63430.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G014116_T01 (Zea mays), 3'ss of exon 9
gtattgcttacttgactttatcgtatttctcttttggttccttgctttgtatttgtcagttgatttccagttctttgcttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG
|||||| |||||        | || |||   | | | |   ||||| | |  |||||  |||| | |   |   ||||| |  ||||||||||||||||||| || ||||||||| ||||| |||||||  ||||||| || |||||||||||| |||  ||||||
gtattggttact--------ttgtgtttgg-tctagttattttgctctatgcttgtccattgaat-ctgatctcttgctctc-ttcagAATATCTTGGTTGTATCCAAGTACTATGCAAGGGTTACCCTCGAGAGGCTTGCTGATCTTCTTTGCCTGACTTTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29658197|gb|CB654472.1|CB654472
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88666183|gb|CI716339.1|CI716339
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88671843|gb|CI725378.1|CI725378
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|89173252|gb|CI721082.1|CI721082
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88668545|gb|CI719502.1|CI719502
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88909038|gb|CI716762.1|CI716762
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88672218|gb|CI726334.1|CI726334
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|86538133|gb|CI178339.1|CI178339
EST:     AGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: AGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88671842|gb|CI725377.1|CI725377
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|29664786|gb|CB661061.1|CB661061
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|29678375|gb|CB674650.1|CB674650
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88668239|gb|CI722978.1|CI722978
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88673479|gb|CI727592.1|CI727592
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88594922|gb|CI715078.1|CI715078
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88973665|gb|CI718093.1|CI718093
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88666273|gb|CI716429.1|CI716429
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|29620777|gb|CB625788.1|CB625788
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|86537599|gb|CI177805.1|CI177805
EST:     ATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: ATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88903498|gb|CI089036.1|CI089036
EST:     CTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|5803423|gb|AI978393.1|AI978393
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|86429895|gb|CI082318.1|CI082318
EST:     CTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88594377|gb|CI714335.1|CI714335
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|86415189|gb|CI069592.1|CI069592
EST:     CAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88905110|gb|CI712409.1|CI712409
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|87029623|gb|CI257418.1|CI257418
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88671603|gb|CI725477.1|CI725477
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|29645308|gb|CB650315.1|CB650315
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|29637545|gb|CB642554.1|CB642554
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88677287|gb|CI729945.1|CI729945
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88672862|gb|CI726978.1|CI726978
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|86482148|gb|CI124781.1|CI124781
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|5002921|gb|AU068030.1|AU068030
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88671927|gb|CI725869.1|CI725869
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88676318|gb|CI730431.1|CI730431
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|27547668|gb|CA765594.2|CA765594
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCCTTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88668077|gb|CI722816.1|CI722816
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88668946|gb|CI719903.1|CI719903
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|33797492|gb|CF324606.1|CF324606
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|25803582|gb|CA759543.1|CA759543
EST:     CTNTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|10930623|gb|AU160897.1|AU160897
EST:     TTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: TTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGAT-CATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88595329|gb|CI714150.1|CI714150
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88671341|gb|CI723517.1|CI723517
EST:     CTTGGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88905414|gb|CI712713.1|CI712713
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88972672|gb|CI717398.1|CI717398
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|6799243|gb|AU082194.1|AU082194
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88908759|gb|CI714901.1|CI714901
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88595223|gb|CI714044.1|CI714044
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88247845|gb|CI247694.1|CI247694
EST:     GGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: GGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88905676|gb|CI712975.1|CI712975
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|29664483|gb|CB660758.1|CB660758
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88246291|gb|CI246140.1|CI246140
EST:     GGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: GGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88594302|gb|CI714260.1|CI714260
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|88669890|gb|CI724006.1|CI724006
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: gi|300215653|gb|HO088279.1|HO088279
EST:     CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT                         AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 74 (downstream exon)
Score: 43

GGAATTCTTTAAAGATGAATATGCGAATGAGAAGAATTTTCTCGGAGGAGCTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttccttgctttgtatttgtcagttgatttccagttctttgcttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG
                        agttgat  putative branch site (score: 43)
                                     ttctttgcttttgttc  putative PPT
            tttgtattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattgcttacttgactttatcgtatttctcttttggttccttgctttgtatttgtcagttgatttccagttctttgcttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT