1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattgcttacttgactttatcgtatttctcttttggttccttgctttgtatttgtcagttgatttccagttctttgcttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG
species | Oryza sativa |
transcript | LOC_Os03g63430.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88595223|gb|CI714044.1|CI714044
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|29664483|gb|CB660758.1|CB660758
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88905414|gb|CI712713.1|CI712713
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|2311390|gb|C27545.1|C27545
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|29664786|gb|CB661061.1|CB661061
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88677287|gb|CI729945.1|CI729945
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|87029623|gb|CI257418.1|CI257418
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88669890|gb|CI724006.1|CI724006
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|5002921|gb|AU068030.1|AU068030
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88909038|gb|CI716762.1|CI716762
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|29639942|gb|CB644951.1|CB644951
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88905110|gb|CI712409.1|CI712409
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88246291|gb|CI246140.1|CI246140
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: GGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|89173252|gb|CI721082.1|CI721082
genomic: GGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88972672|gb|CI717398.1|CI717398
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88668239|gb|CI722978.1|CI722978
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88247845|gb|CI247694.1|CI247694
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: GGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|4715022|gb|AU056139.1|AU056139
genomic: GGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGANGCTCEST: gi|88908759|gb|CI714901.1|CI714901
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88671927|gb|CI725869.1|CI725869
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|10930623|gb|AU160897.1|AU160897
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: TTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88903498|gb|CI089036.1|CI089036
genomic: TTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGAT-CATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88671843|gb|CI725378.1|CI725378
genomic: CTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88673479|gb|CI727592.1|CI727592
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88666273|gb|CI716429.1|CI716429
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|29678375|gb|CB674650.1|CB674650
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|5803423|gb|AI978393.1|AI978393
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88668946|gb|CI719903.1|CI719903
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88671603|gb|CI725477.1|CI725477
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88676318|gb|CI730431.1|CI730431
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|86415189|gb|CI069592.1|CI069592
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|27547668|gb|CA765594.2|CA765594
genomic: CAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCCTTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|29645308|gb|CB650315.1|CB650315
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88594377|gb|CI714335.1|CI714335
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|25803582|gb|CA759543.1|CA759543
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTNTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88973665|gb|CI718093.1|CI718093
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88594302|gb|CI714260.1|CI714260
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|29658197|gb|CB654472.1|CB654472
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88595329|gb|CI714150.1|CI714150
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|86537599|gb|CI177805.1|CI177805
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: ATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88594922|gb|CI715078.1|CI715078
genomic: ATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88672862|gb|CI726978.1|CI726978
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|6799243|gb|AU082194.1|AU082194
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|86538133|gb|CI178339.1|CI178339
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: AGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88671842|gb|CI725377.1|CI725377
genomic: AGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|86482148|gb|CI124781.1|CI124781
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|33797492|gb|CF324606.1|CF324606
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|300215653|gb|HO088279.1|HO088279
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88905214|gb|CI712513.1|CI712513
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88672218|gb|CI726334.1|CI726334
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88671341|gb|CI723517.1|CI723517
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTGGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88668545|gb|CI719502.1|CI719502
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88905676|gb|CI712975.1|CI712975
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|4715023|gb|AU056140.1|AU056140
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: TTTGGGTGACAAAGCTGCAGAGGATCTGAAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|29637545|gb|CB642554.1|CB642554
genomic: TTTGGGTGACAAAGCTGCAGAGGATCTG-AAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|86429895|gb|CI082318.1|CI082318
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|88668077|gb|CI722816.1|CI722816
genomic: CTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCEST: gi|29620777|gb|CB625788.1|CB625788
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
EST: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACAT AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
genomic: CTTTGGGTGACAAAGCTGCAGAGGATCTGAAATTGAGGATCATTGAACATgtattgctta ... ttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTC
ttggttccttgctttgtatttgtcagttgatttccagttctttgcttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG
agttgat putative branch site (score: 5)
ttctttgcttttgttc putative PPT
tttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcttacttgactttatcgtatttctcttttggttccttgctttgtatttgtcagttgatttccagttctttgcttttgttcagAATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT