1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttagtgctgaattccatgaaactgaaattaatttctgtagttctgttgaaacattaataattcaatgtattggtaacagGTTAAGTCGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGAT
species | Oryza sativa |
transcript | LOC_Os03g61670.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATCTACGCTTTTGATAGTTTGAACCACATTGGCATTGAGCTGTGGCAG GTTAAGTCGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAGEST: gi|86484126|gb|CI126759.1|CI126759
genomic: ACATCTACGCTTTTGATAGTTTGAACCACATTGGCATTGAGCTGTGGCAGgttagtgctg ... ttggtaacagGTTAAGTCGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAG
EST: TACGCTTTTGATAGTTTGAACCACATTGGCATTGAGCTGTGGCAG GTTAAGTCGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAGEST: gi|58669776|gb|CK058462.1|CK058462
genomic: TACGCTTTTGATAGTTTGAACCACATTGGCATTGAGCTGTGGCAGgttagtgctg ... ttggtaacagGTTAAGTCGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAG
EST: ACATCTACGCTTTTGATAGTTTGAACCACATTGGCATTGAGCTGTGGCAG GTTAAGTCGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAG
genomic: ACATCTACGCTTTTGATAGTTTGAACCACATTGGCATTGAGCTGTGGCAGgttagtgctg ... ttggtaacagGTTAAGTCGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAG
aaattaatttctgtagttctgttgaaacattaataattcaatgtattggtaacagGTTAAGTCGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGAT
cattaat putative branch site (score: 29)
aaacattaataattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgctgaattccatgaaactgaaattaatttctgtagttctgttgaaacattaataattcaatgtattggtaacagGTTAAGTCGGGAACTTTGTTTGACAACATTCTTATCACTGATGACCCTGAGTATGCCAAGAAATTTGCAGAAGAAACCTGGGCCAAGCATAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA