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...ttccccaattggtctaaagtgtctgatattttatctaaacttttttttttaaaaaaaaatatatgcaactttctctgagtgctttaacttttgtgagcagAAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTAACGAAAGTG
species | Oryza sativa |
transcript | LOC_Os03g58240.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGC AAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTAEST: gi|29629845|gb|CB634854.1|CB634854
genomic: TGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGCgtaagttgct ... ttgtgagcagAAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTA
EST: TGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGC AAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTAEST: gi|29666666|gb|CB662941.1|CB662941
genomic: TGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGCgtaagttgct ... ttgtgagcagAAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTA
EST: TGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGC AAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTAEST: gi|29629844|gb|CB634853.1|CB634853
genomic: TGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGCgtaagttgct ... ttgtgagcagAAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTA
EST: TGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGC AAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTA
genomic: TGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGCgtaagttgct ... ttgtgagcagAAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTA
tttttaaaaaaaaatatatgcaactttctctgagtgctttaacttttgtgagcagAAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTAACGAAAGTG
ctttaac putative branch site (score: 5)
cttttgt CT-rich tract
aaaaaaaaatatatgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccccaattggtctaaagtgtctgatattttatctaaacttttttttttaaaaaaaaatatatgcaactttctctgagtgctttaacttttgtgagcagAAGGAAAATCTGTTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTAACGAAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - gtgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgagtg