1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagccacttacactcttaagcctcccgctattcataagtcataagtcataaccaaatttagaaaaaaaaaatgttgtgcgtgaccacgcttttatatttcttgctagATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGGGTGGCGGACGCCATCTCCCGGTCGAGCAATCGAAGCGCGAAAGAACAGC
species | Oryza sativa |
transcript | LOC_Os03g57660.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAAATAAGCAGGTCTGCGGCTTATGTTGGCCTATAAGTGGGTTTCGCGG ATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGGEST: gi|88385194|gb|CI561850.1|CI561850
genomic: CAAAATAAGCAGGTCTGCGGCTTATTTTGGCCTATAAGTGGGTTTCGCGGgttagccact ... ttcttgctagATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGG
EST: CAAAATAAGCAGGTGTGCGGCTTATTTTGGCCTATAAGTGGGTTTCGCGG ATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGGEST: gi|86523382|gb|CI163588.1|CI163588
genomic: CAAAATAAGCAGGTCTGCGGCTTATTTTGGCCTATAAGTGGGTTTCGCGGgttagccact ... ttcttgctagATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGG
EST: CAAAATAAGCAGGTCTGCGGCTTATTTTGGCCTATAAGTGGGTTTCGCGG ATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGG
genomic: CAAAATAAGCAGGTCTGCGGCTTATTTTGGCCTATAAGTGGGTTTCGCGGgttagccact ... ttcttgctagATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGG
caaatttagaaaaaaaaaatgttgtgcgtgaccacgcttttatatttcttgctagATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGGGTGGCGGACGCCATCTCCCGGTCGAGCAATCGAAGCGCGAAAGAACAGC
cttttatatttctt CT-rich tract
ttagaaaaaaaaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccacttacactcttaagcctcccgctattcataagtcataagtcataaccaaatttagaaaaaaaaaatgttgtgcgtgaccacgcttttatatttcttgctagATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGGGTGGCGGACGCCATCTCCCGGTCGAGCAATCGAAGCGCGAAAGAACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCTCCG