1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcatcttcacatagtatctggccagttgtaggaggaacaaattgttatttgattactcttggacttctcaaattaatgccataatcatgaatacttgcagGCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGACCACAATGATCTTGTGTACCTGCTAAAATGATGATCCAGCTGATGATCC
species | Oryza sativa |
transcript | LOC_Os03g55389.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAGCTATG GCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGAEST: gi|5607312|gb|AU075984.1|AU075984
genomic: AGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAGCTATGgtaagtctac ... atacttgcagGCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGA
EST: AGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAGCTATG GCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGAEST: gi|29614063|gb|CB619076.1|CB619076
genomic: AGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAGCTATGgtaagtctac ... atacttgcagGCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGA
EST: AGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAGCTATG GCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGA
genomic: AGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAGCTATGgtaagtctac ... atacttgcagGCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGA
tatttgattactcttggacttctcaaattaatgccataatcatgaatacttgcagGCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGACCACAATGATCTTGTGTACCTGCTAAAATGATGATCCAGCTGATGATCC
aattaat putative branch site (score: 2)
tcaaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcttcacatagtatctggccagttgtaggaggaacaaattgttatttgattactcttggacttctcaaattaatgccataatcatgaatacttgcagGCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGACCACAATGATCTTGTGTACCTGCTAAAATGATGATCCAGCTGATGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - cttcaca
- - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccata