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gtactcccatttatgatacagtgtggcttgcccgctttaagtaaatggttctgagccataggatcttgattctatgaccttaattgttcgcttgcagGCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGAAGGATCTTATCCAACTACTAGAGGATGTGTACATCCAAGAT
species | Oryza sativa |
transcript | LOC_Os03g53750.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATGGGAAAATGCGAATATCACTTTATTGAAGTTATGGCATGTCCTTCAG GCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGAEST: gi|29667391|gb|CB663666.1|CB663666
genomic: GATGGGAAAATGCGAATATCACTTTATTGAAGTTATGGCATGTCCTTCAGgtactcccat ... tcgcttgcagGCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGA
EST: GATGGGAAAATGCGAATATCACTTTATTGAAGTTATGGCATGTCCTTCAG GCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGAEST: gi|29667390|gb|CB663665.1|CB663665
genomic: GATGGGAAAATGCGAATATCACTTTATTGAAGTTATGGCATGTCCTTCAGgtactcccat ... tcgcttgcagGCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGA
EST: GATGGGAAAATGCGAATATCACTTTATTGAAGTTATGGCATGTCCTTCAG GCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGAEST: gi|89180560|gb|CI044839.1|CI044839
genomic: GATGGGAAAATGCGAATATCACTTTATTGAAGTTATGGCATGTCCTTCAGgtactcccat ... tcgcttgcagGCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGA
EST: GATGGGAAAATGCGAATATCACTTTATTGAAGTTATGGCATGTCCTTCAG GCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGA
genomic: GATGGGAAAATGCGAATATCACTTTATTGAAGTTATGGCATGTCCTTCAGgtactcccat ... tcgcttgcagGCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGA
aaatggttctgagccataggatcttgattctatgaccttaattgttcgcttgcagGCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGAAGGATCTTATCCAACTACTAGAGGATGTGTACATCCAAGAT
ccttaat putative branch site (score: 4)
ttcgctt putative PPT
ttaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcccatttatgatacagtgtggcttgcccgctttaagtaaatggttctgagccataggatcttgattctatgaccttaattgttcgcttgcagGCTGCCTGAATGGGGGAGGTCAAATAAAACCTGCCAAAGGCCAGTCTGCGAAGGATCTTATCCAACTACTAGAGGATGTGTACATCCAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG