1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cattggttatacttagcgaaaaatatgatatataccacccaaatctttctcatatatatgcttagtggtagttcctgagcattcaaccttttgttgacagGGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTGACGACATAGAGCTCCCTGACGATGAAGATGATCCGGCGGACGATGATGA
species | Oryza sativa |
transcript | LOC_Os03g51540.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATG GGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTGEST: gi|86493599|gb|CI136232.1|CI136232
genomic: TCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATGgtatgtaatt ... ttgttgacagGGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTG
EST: TCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATG GGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTGEST: gi|163921250|gb|EG714138.1|EG714138
genomic: TCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATGgtatgtaatt ... ttgttgacagGGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTG
EST: TCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATG GGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTGEST: gi|88320384|gb|CI523127.1|CI523127
genomic: TCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATGgtatgtaatt ... ttgttgacagGGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTG
EST: TCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATG GGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTG
genomic: TCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATGgtatgtaatt ... ttgttgacagGGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTG
tttctcatatatatgcttagtggtagttcctgagcattcaaccttttgttgacagGGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTGACGACATAGAGCTCCCTGACGATGAAGATGATCCGGCGGACGATGATGA
ccttttgtt CT-rich tract
atatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattggttatacttagcgaaaaatatgatatataccacccaaatctttctcatatatatgcttagtggtagttcctgagcattcaaccttttgttgacagGGGTTAGTAGAAATGAGTCAAGCTCCCAGACAGGACAAGCACTTGATAGTGACGACATAGAGCTCCCTGACGATGAAGATGATCCGGCGGACGATGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca