1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actaaagtgccaaatagtgcacgattttgggtcagaaaacaatgaatcgagtccgtgtgggtgtatccatcatgaaatgacaccaactatgctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATAAAGCTACCGACACATACCGCTACCTTGGTGGTTACTGGGAATCCAGAG
species | Oryza sativa |
transcript | LOC_Os03g49770.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|218479373|gb|FG952379.1|FG952379
genomic: AGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|86481119|gb|CI123752.1|CI123752
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|88998022|gb|CI037907.1|CI037907
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|29633377|gb|CB638386.1|CB638386
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|25806343|gb|CA762304.1|CA762304
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|11233415|gb|AU164827.1|AU164827
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAAT-CTGAGAAGTTGAGGCTTGAACAGANACAACGACAG AEST: gi|11233415|gb|AU164827.1|AU164827
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcag-
EST: ATGAAAGAGCAAAT-CTGAGAAGTTGAGGCTTGAACAGANACAACGACAG AEST: gi|29634234|gb|CB639243.1|CB639243
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcag-
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|8858176|gb|AU095494.1|AU095494
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|66923661|gb|CX110509.1|CX110509
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|88837400|gb|CI078760.1|CI078760
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|29682318|gb|CB678593.1|CB678593
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATEST: gi|38479341|gb|CF963472.1|CF963472
genomic: ATGAAAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
EST: TGAGGGGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAG GCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
genomic: TGA-AAGAGCAAATGCTGAGAAGTTGAGGCTTGAACAGAGACAACGACAGgttagtctgt ... gctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGAT
atcgagtccgtgtgggtgtatccatcatgaaatgacaccaactatgctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATAAAGCTACCGACACATACCGCTACCTTGGTGGTTACTGGGAATCCAGAG
atgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaaagtgccaaatagtgcacgattttgggtcagaaaacaatgaatcgagtccgtgtgggtgtatccatcatgaaatgacaccaactatgctgctgcagGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGATAAAGCTACCGACACATACCGCTACCTTGGTGGTTACTGGGAATCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG