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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcagtaatcagttgtatccttctccagcttcagattcttctagcactgcattctactgacgtgaccaaactgataaattcagaagtaacataactcataaaacctttgttgatccatcgatctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTGAACTACATCAAGCAGAAGTACGGGAATCCGACAGTCGTCATAACTGAAA

Basic information

species Oryza sativa
transcript LOC_Os03g49600.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49600.1 (Oryza sativa), 3'ss of exon 9
lower sequence: AC217401.3_FGT001 (Zea mays), 3'ss of exon 9
gtatgcagtaatcagttgtatccttctccagcttcagat-tcttctagcac-tgcattctactgacgtgaccaaactgataaattcagaagtaacataactcataaaacctttgttgatccatcgatctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTGAACTACATCAAGCAGAAGTACGGGAATCCGACAGTCGTCATAACTGAAA
       |||   |||| |   ||||  ||  | ||||| || || |  || |     | |     |   |    ||| |  ||| |||| |  |               ||||  | | || | || |   ||||| ||||| || |||||||||||||| |||   ||||||||||| |||||||||||  | ||||| ||||| || ||||| |||||  ||||||| || |
-------gtatgtagttcttcacttcagcatttgcagatatcatccaatacatattacccatcagtggatcagtgctggtggattgagaaatggc---------------tttg--gcttca-caatat---cagGCGAATTCAAAGTGGCTTTACATCGTCCCAGAAGGGATGTACGGTTGTGTGAACTATCTGAAGCACAAGTATGGAAATCCAACAGTTTTCATAACCGAGA

upper sequence: LOC_Os03g49600.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G118003_T04 (Zea mays), 3'ss of exon 1
gtatgcag-taatcagttgtatccttctccagcttcagattcttcta-gcactgcattctac-tgacgtgaccaaactgataaattcagaagtaacataactcataaaacctttgttgatccatcg-atctttac--agGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTGAACTACATCAAGCAGAAGTACGGGAATCCGACAGTCGTCATAACTGAAA
||| || | |  ||  |    ||  ||||        | ||   ||    | |||||  ||    | ||  |   |   |  |||||  |||||    |||  | | ||   ||| | | | | || ||    ||  |||| |||||||| ||||| |||||||  ||   |||||||||||| || ||||||||| ||||| ||||||| |||||||| ||  ||  |||||| || |
gtacgctgctcctccatctactctctctctcatcgttgtttgcactgcatagtgcatggtatgctaggtagcatcagctacgaattctaaagtactgcaaca-agagaatacttgctaaccaaacgcatggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTGAACTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGA

upper sequence: LOC_Os03g49600.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 9
gtatgcagtaatcagttgtatccttctccagcttcagattcttctagcactgcattctactgacgtgaccaaactgataaattcagaagtaacataact-cataaaacctttgttgatccatcgatctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTGAACTACATCAAGCAGAAGTACGGGAATCCGACAGTCGTCATAACTGAAA
                                            ||    |  | |        |  |   |    ||| |   | ||||   | |||     |    ||   |||     || || ||||||||| |||||| ||||||||||||  || |||||||| ||||||  ||   |||  ||||| ||| |    || || || || || ||  || || ||||||
-------------------------------------------gtaagtttaaacttagtcacagatattcattatatatagatacaagtgcaacaaccatgcattgactaatttgtaagttcaatttttacagGCTAATTCTTATTGGCTTTACAATGTACCATGGGGCATGTACAAATCATTGATGTACATAAAGGAACGTTATGGAAACCCAACTGTTATCTTATCTGAAA

upper sequence: LOC_Os03g49600.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA07G11310.1 (Glycine max), 3'ss of exon 9
gtatgcagtaatcagttgtatccttctccagcttcagattcttctagcactgcattctactgacgtg-accaaactgataaattcagaagtaaca-taactcataaaacctttgttgatccatcgatctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTGAACTACATCAAGCAGAAGTACGGGAATCCGACAGTCGTCATAACTGAAA
                                            ||    |  |   || ||||    |   |  | | | || ||   | | ||   |  |||  |    || || |       || |||||||||  ||||| |||||||||||| ||| |||||||| ||||||  ||   |||  ||||| ||| |    || || || || || ||  || || | ||||
-------------------------------------------gtaa-gttttaacttagtgacagatattcattttaaagatacaagtgcaccaaccatgcattgactaatttttaagttg--aatttttacagGCTTATTCTTATTGGCTTTACAACGTACCATGGGGCATGTACAAATCATTGATGTACATAAAGGAACGTTATGGAAACCCAACTGTGTTCTTATCCGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86593847|gb|CI260076.1|CI260076
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|428512|gb|D24663.1|D24663
EST:     TTNCGAAAAACGGCAAACCAATTGGCCCACAG                         GCAAATTCTAATTGGCTTTACATCG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCG
EST: gi|29657771|gb|CB654046.1|CB654046
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|325494326|gb|JG458850.1|JG458850
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCGAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|89168841|gb|CI020922.1|CI020922
EST:     CCTATGTTTTTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: CCTATGTTTTTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|29678658|gb|CB674933.1|CB674933
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86433834|gb|CI094177.1|CI094177
EST:     GAAAAACGGCAAACCAATGGGACCACAG                         GCAAATTCTAATGGGCTGTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: GAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|163928475|gb|EG711363.1|EG711363
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|27576307|gb|CA999001.1|CA999001
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|27577942|gb|CB000637.1|CB000637
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|88996445|gb|CI259949.1|CI259949
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|29640990|gb|CB645997.1|CB645997
EST:     TTGCGAAAAACGGCAAACCAATTGGACCGCAG                         GCAAATTTTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|33683958|gb|CF312197.1|CF312197
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCC-TGGNGGATGTACCGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|29667349|gb|CB663624.1|CB663624
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|8856614|gb|AU093932.1|AU093932
EST:     TTCCGGAAAAACGGCAANCCCAATTGGACCACAG                         GCAAATTCTAAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGT
genomic: TTGC-GAAAAACGGCAA-ACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCT-AATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGT
EST: gi|29672037|gb|CB668312.1|CB668312
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|58669749|gb|CK058435.1|CK058435
EST:     CAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCA---GGGATGTACGGATGTGTG
genomic: CAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|3107762|gb|D43502.1|D43502
EST:     TTCCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTNTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|58657255|gb|CK045935.1|CK045935
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86495139|gb|CI137772.1|CI137772
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86500079|gb|CI142712.1|CI142712
EST:     GCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: GCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|89197084|gb|CI021924.1|CI021924
EST:     TTGCGAAAAACAGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|29659818|gb|CB656093.1|CB656093
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86414783|gb|CI069186.1|CI069186
EST:     AAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: AAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|88245939|gb|CI245788.1|CI245788
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|89184448|gb|CI047013.1|CI047013
EST:     TGTTTTTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TGTTTTTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|29671917|gb|CB668192.1|CB668192
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|58673266|gb|CK061952.1|CK061952
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86502760|gb|CI145393.1|CI145393
EST:     GCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: GCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|88903557|gb|CI089095.1|CI089095
EST:     AACCAATTGGACCACAG                         GCAAATTCTAATNGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: AACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86828091|gb|CI274966.1|CI274966
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|163928720|gb|EG711233.1|EG711233
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGAT
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGAT
EST: gi|88976936|gb|CI257632.1|CI257632
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86501795|gb|CI144428.1|CI144428
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|58679400|gb|CK068087.1|CK068087
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|89184138|gb|CI046703.1|CI046703
EST:     AACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: AACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|14981080|gb|BI305771.1|BI305771
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGCGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|88844856|gb|CI022210.1|CI022210
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTTGT
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATG-TGT
EST: gi|29638181|gb|CB643190.1|CB643190
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|9884520|gb|BE607353.1|BE607353
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86495823|gb|CI138456.1|CI138456
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86498278|gb|CI140911.1|CI140911
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|87029134|gb|CI276402.1|CI276402
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|218499918|gb|FG954902.1|FG954902
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGAT
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGAT
EST: gi|29667383|gb|CB663658.1|CB663658
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|86494154|gb|CI136787.1|CI136787
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|23514367|gb|BU673604.1|BU673604
EST:     TATGTTTTTGCGAAAAACGCCAAACCAAGTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TATGTTTTTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|87010187|gb|CI279284.1|CI279284
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|58598612|gb|CK009140.1|CK009140
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|33676122|gb|CF304361.1|CF304361
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGC
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGC
EST: gi|58671738|gb|CK060424.1|CK060424
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|27577236|gb|CA999930.1|CA999930
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
EST: gi|87038444|gb|CI193066.1|CI193066
EST:     TTGCGAAAAACGGCAAACCAATTGGACCACAG                         GCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG
genomic: TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 48 (downstream exon)
Score: 4

TTGCGAAAAACGGCAAACCAATTGGACCACAGgtatgcagta ... atctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTGAACTACATCAAGCAGAAGTACGGGAATCCGACAGTCGTCATAACTGAAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattcagaagtaacataactcataaaacctttgttgatccatcgatctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTGAACTACATCAAGCAGAAGTACGGGAATCCGACAGTCGTCATAACTGAAA
                                              tctttac  CT-rich tract
           taacataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcagtaatcagttgtatccttctccagcttcagattcttctagcactgcattctactgacgtgaccaaactgataaattcagaagtaacataactcataaaacctttgttgatccatcgatctttacagGCAAATTCTAATTGGCTTTACATCGTGCCATGGGGGATGTACGGATGTGTGAACTACATCAAGCAGAAGTACGGGAATCCGACAGTCGTCATAACTGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT