1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatagcaggcattgttttgctggtggcttccagctttctgttgtccattgctaagctgagactcttgtactcaactttcagGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGAATTTACTACATCAACAAATCCTATTGTAAAACAG
species | Oryza sativa |
transcript | LOC_Os03g46740.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAG GTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGAEST: gi|27921057|gb|CB096865.1|CB096865
genomic: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAGgtaatagcag ... caactttcagGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGA
EST: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAG GTTGTTATTCCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGAEST: gi|58691671|gb|CK080358.1|CK080358
genomic: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAGgtaatagcag ... caactttcagGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGA
EST: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAG GTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGAEST: gi|88508239|gb|CI435745.1|CI435745
genomic: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAGgtaatagcag ... caactttcagGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGA
EST: TCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAG GTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGAEST: gi|58593744|gb|CF992052.1|CF992052
genomic: TCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAGgtaatagcag ... caactttcagGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGA
EST: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAG GTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGCACACAAGEST: gi|27547660|gb|CA767399.2|CA767399
genomic: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAGgtaatagcag ... caactttcagGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATG-ACACAAG
EST: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAG GTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGA
genomic: TATGTGGTTGTCACTCATCAGCATAGCACAATAAAACGAGCCGTTGACAGgtaatagcag ... caactttcagGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGA
cttccagctttctgttgtccattgctaagctgagactcttgtactcaactttcagGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGAATTTACTACATCAACAAATCCTATTGTAAAACAG
ctttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagcaggcattgttttgctggtggcttccagctttctgttgtccattgctaagctgagactcttgtactcaactttcagGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGAATTTACTACATCAACAAATCCTATTGTAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA