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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accctaaatacaggacctttttttggtgcactagatatgccagtcagtcttgcttctggattagaccagtttcacatttctggtcatcttatttatgcagTTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAG

Basic information

species Oryza sativa
transcript LOC_Os03g44900.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g44900.3 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G340749_T02 (Zea mays), 3'ss of exon 3
-accctaaatacaggacctttttttggtgcactagatatgccagtcagtcttgcttctggat-tagaccagtttcacatttctggtcatcttatttatgcagTTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAG
 |   |  | | |    | || |||    ||  |  | |     | | | |||||||    | ||| |   |||  ||   ||| |||  || |||||||||||||| || |||||||||||||| || ||||||| |  | ||||  ||    ||| |||        
aattgtgtaaaaatattcgttgtttaagccaa-atgtcttttttttatttttgcttcaacttatagcctgcttttgcaca-ctgatcagtttgtttatgcagTTTAATTCACAGAGTTCCTCTATATCTTCCCAAGTGAATCTTGGAGTTCA--AGGAACAG-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58590602|gb|CF988910.1|CF988910
EST:     TAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAG                         TTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGG
genomic: TAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAGgtacttcacg ... atttatgcagTTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGG
EST: gi|58586667|gb|CF984975.1|CF984975
EST:     CAAACCCGCTCTTACAACAG                         TTTAACTCTCAGAGTTCCTCTATTTCCTCCCAGAGCGGGTATTGGGCTTGG
genomic: CAAACCCGCTCTTACAACAGgtacttcacg ... atttatgcagTTTAACTCTCAGAGTTCCTCTATTTCCTCCCA-AGCGGGTATTGGGCTTGG
EST: gi|58676955|gb|CK065642.1|CK065642
EST:     TAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAG                         TTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGG
genomic: TAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAGgtacttcacg ... atttatgcagTTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcttgcttctggattagaccagtttcacatttctggtcatcttatttatgcagTTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGCAGGTACAAGTACCAG
                                         tcttattt  CT-rich tract
                                        atcttatttat  TA-rich tract