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gtatgtttaacagttgcatttgtgttaagatttcattggtactaagtgttctgtattgtgttaatatatcagtgatgcctgacaattgctggtttgcttttacagGCACTGCGTCACATTAGGCAAATTGCACATGAATCAAGTGGGGAAATGCCCTATGGAGGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGC
species | Oryza sativa |
transcript | LOC_Os03g43930.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACCACTTTATGAATCTCCTAAGATCCTTGCGCAGAAGATGACAATTGCT GCACTGCGTCACATTAGTGCAAATTGCACATGAATCAAGTGGGGAAATGCCEST: gi|58600403|gb|CK010931.1|CK010931
genomic: GACCACTTTATGAATCTCCTAAGATCCTTGCGCAGAAGATGACAATTGCTgtatgtttaa ... gcttttacagGCACTGCGTCACATTAG-GCAAATTGCACATGAATCAAGTGGGGAAATGCC
EST: TTTATGACAATCTCCTAAAGAATCCTTGGCGCAGGAAGATGACAATTGCT GCACTGCGTCACATTAGGCAAATTGCACATGAATEST: gi|29625769|gb|CB630780.1|CB630780
genomic: TTTATGA-A-TCTCCTAA-GA-TCCTTG-CGCAG-AAGATGACAATTGCTgtatgtttaa ... gcttttacagGCACTGCGTCACATTAGGCAAATTGCACATGAAT
EST: GACCACTTTATGAATCTCCTAAGATCCTTGCGCAGAAGATGACAATTGCT GCACTGCGTCACATTAGGCAAATTGCACATGAATCAAGTGGGGAAATGCCC
genomic: GACCACTTTATGAATCTCCTAAGATCCTTGCGCAGAAGATGACAATTGCTgtatgtttaa ... gcttttacagGCACTGCGTCACATTAGGCAAATTGCACATGAATCAAGTGGGGAAATGCCC
ctgtattgtgttaatatatcagtgatgcctgacaattgctggtttgcttttacagGCACTGCGTCACATTAGGCAAATTGCACATGAATCAAGTGGGGAAATGCCCTATGGAGGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGC
gcctgac putative branch site (score: 20)
tttgctttt putative PPT
ttgtgttaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttaacagttgcatttgtgttaagatttcattggtactaagtgttctgtattgtgttaatatatcagtgatgcctgacaattgctggtttgcttttacagGCACTGCGTCACATTAGGCAAATTGCACATGAATCAAGTGGGGAAATGCCCTATGGAGGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG