1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgtttgttttatttcaatgattatctgaacttttgtgcttgcacatttataaatttgctaatttgtgtatctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
species | Oryza sativa |
transcript | LOC_Os03g33590.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAG TTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAEST: gi|29682391|gb|CB678666.1|CB678666
genomic: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGgtgtttgttt ... ctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
EST: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAG TTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAEST: gi|29671504|gb|CB667779.1|CB667779
genomic: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGgtgtttgttt ... ctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
EST: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAG TTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAEST: gi|29671594|gb|CB667869.1|CB667869
genomic: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGgtgtttgttt ... ctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
EST: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAG TTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAEST: gi|29671505|gb|CB667780.1|CB667780
genomic: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGgtgtttgttt ... ctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
EST: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAG TTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTTTGAAGCATGCACAAEST: gi|88222629|gb|CI222585.1|CI222585
genomic: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGgtgtttgttt ... ctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
EST: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAG TTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAEST: gi|29666042|gb|CB662317.1|CB662317
genomic: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGgtgtttgttt ... ctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
EST: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAG TTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAEST: gi|89183748|gb|CI046313.1|CI046313
genomic: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGgtgtttgttt ... ctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
EST: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAG TTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAEST: gi|29671595|gb|CB667870.1|CB667870
genomic: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGgtgtttgttt ... ctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
EST: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAG TTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTTTGAAGCATGCACAA
genomic: CAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGgtgtttgttt ... ctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
tgaacttttgtgcttgcacatttataaatttgctaatttgtgtatctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
tgctaat putative branch site (score: 3)
tatcttt putative PPT
acatttataaatttgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttgttttatttcaatgattatctgaacttttgtgcttgcacatttataaatttgctaatttgtgtatctttggttagTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC