1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...acctgctgccgtaagacccaaaatttcagaaattcattccaaaattgtgaacctagtctatcacggttccaatatttatgtgatggatattgtaattcagGATAAGTGGGAACTCCTTTAGCAACAGTCCAGTCAGTCCTGCACCATCATCTCCACCATCCACTACTTCACAATCCCCGCCACGACAGCCTTCTACCAGA
species | Oryza sativa |
transcript | LOC_Os03g27990.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGGCATAAGTAATCTGCA GATAAGTGGGAACTCCTTTAGCAACAGTCCAGTCAGTCCTGCACCATCATCEST: gi|58607132|gb|CK035165.1|CK035165
genomic: CAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGGCATAAGTAATCTGCAgtaagttttt ... tgtaattcagGATAAGTGGGAACTCCTTTAGCAACAGTCCAGTCAGTCCTGCACCATCATC
EST: AAAAGGCATAAGTAATCTGCA GATAAGTGGGAACTCCTTTA-CAACAGTCCGAGGCAGTCCTGCACCATCATEST: gi|87006783|gb|CI285817.1|CI285817
genomic: AAAAGGCATAAGTAATCTGCAgtaagttttt ... tgtaattcagGATAAGTGGGAACTCCTTTAGCAACAGTCC-AGTCAGTCCTGCACCATCAT
EST: CAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGGCATAAGTAATCTGCA GATAAGTGGGAACTCCTTTAGCAACAGTCCAGTCAGTCCTGCACCATCATC
genomic: CAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGGCATAAGTAATCTGCAgtaagttttt ... tgtaattcagGATAAGTGGGAACTCCTTTAGCAACAGTCCAGTCAGTCCTGCACCATCATC
tgtgaacctagtctatcacggttccaatatttatgtgatggatattgtaattcagGATAAGTGGGAACTCCTTTAGCAACAGTCCAGTCAGTCCTGCACCATCATCTCCACCATCCACTACTTCACAATCCCCGCCACGACAGCCTTCTACCAGA
aatatttatgtgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctgctgccgtaagacccaaaatttcagaaattcattccaaaattgtgaacctagtctatcacggttccaatatttatgtgatggatattgtaattcagGATAAGTGGGAACTCCTTTAGCAACAGTCCAGTCAGTCCTGCACCATCATCTCCACCATCCACTACTTCACAATCCCCGCCACGACAGCCTTCTACCAGA
- -tgctgcc
- - - - - - - - cccaaaa
- - - - - - - - - - - - - - - - - - -tccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatg