1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atttcacctgctaaccacagtataatgattccaaaatttgagaactctgtgaccaatgcagattttcatttgtaaataaaaatattctacctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCTGTGAGAATACATGGGGTAGCTATGAGTGCAGTTGTGGCGGTAACAACAT
species | Oryza sativa |
transcript | LOC_Os03g21720.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAGTGCAAGGGCTGCAGCTEST: gi|29642136|gb|CB647143.1|CB647143
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: AGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCTEST: gi|29665177|gb|CB661452.1|CB661452
genomic: AGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCTEST: gi|29663536|gb|CB659811.1|CB659811
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCTEST: gi|58687228|gb|CK075915.1|CK075915
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAGTGCAAGGGCTGCAGCTEST: gi|38479499|gb|CF963610.1|CF963610
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGCAAATGTCCGCCGGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAGTGCAAGGGCTGCAGCTEST: gi|29665176|gb|CB661451.1|CB661451
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCTEST: gi|218494604|gb|FG959186.1|FG959186
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGC-AATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAGTGCAAGGGCTGCAGCTEST: gi|300215578|gb|HO088204.1|HO088204
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAGTGCAAGGGCTGCAGCTEST: gi|14571249|gb|BI118617.1|BI118617
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAGTGCAAGGGCTGCAGCTEST: gi|58692052|gb|CK080739.1|CK080739
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAGTGCAAGGGCTGCAGCTEST: gi|58595298|gb|CF993606.1|CF993606
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
EST: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAG ATATTGATGAATGCAAGGAAAAACTTTACTGTCAGTGCAAGGGCTGCAGCT
genomic: CTGCAAATGTCCACCAGGTTTCAAGGGTGATGGAATAAAAAGTTGTGAAGgtattttata ... ctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCT
tctgtgaccaatgcagattttcatttgtaaataaaaatattctacctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCTGTGAGAATACATGGGGTAGCTATGAGTGCAGTTGTGGCGGTAACAACAT
ttctacct CT-rich tract
agattttcatttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcacctgctaaccacagtataatgattccaaaatttgagaactctgtgaccaatgcagattttcatttgtaaataaaaatattctacctgcttgcagATATTGATGAATGCAAGGAAAAACTTTACTGTCAATGCAAGGGCTGCAGCTGTGAGAATACATGGGGTAGCTATGAGTGCAGTTGTGGCGGTAACAACAT
- - - cctgcta
- - - - - - - - - - - - - - -tccaaaa
- - - - - - - - - - - - - - - - - - - - - - - ctgtgac
- - - - - - - - - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata