1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcacacttgaaacacctaaatatcagctatgctatttctttccatttgtgttttcgtgaattgaatttctaaaactctatattttctatgttctttgcagGGCTCTGAAATGACTCTGGACAGGTACGCTGCTGCTGAGGGTTTCTATAAGCTAGCAATGGCCTACGCGCCTGTGCCAGATCTTCATATAATGTGGTTAC
species | Oryza sativa |
transcript | LOC_Os03g21080.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTTGAACATGCCCTCTTG GGCTCTGAAATGACTCTGGACAGGTACGCGGCTGCTGAGGGTTTCTATAAGEST: gi|58653963|gb|CK042643.1|CK042643
genomic: CCAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTTGAACATGCCCTCTTGgtaagcaatt ... ttctttgcagGGCTCTGAAATGACTCTGGACAGGTACGCTGCTGCTGAGGGTTTCTATAAG
EST: CCAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTTGAACATGCCCTCTTG GGCTCTGAAATGACTCTGGACAGGTACGCGGCTGCTGAGGGTTTCTATAAGEST: gi|58661183|gb|CK049863.1|CK049863
genomic: CCAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTTGAACATGCCCTCTTGgtaagcaatt ... ttctttgcagGGCTCTGAAATGACTCTGGACAGGTACGCTGCTGCTGAGGGTTTCTATAAG
EST: CCAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTTGAACATGCCCTCTTG GGCTCTGAAAATGACTCTGGEST: gi|58668402|gb|CK057088.1|CK057088
genomic: CCAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTTGAACATGCCCTCTTGgtaagcaatt ... ttctttgcagGGCTCTGAAA-TGACTCTGG
EST: CAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTTNGAACATGCCCTCTTG GGCTCTGAAATGACTCTGGACAGGTACGCGGCTGCTGAGGGTTTCTATAAGEST: gi|58653644|gb|CK042324.1|CK042324
genomic: CAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTT-GAACATGCCCTCTTGgtaagcaatt ... ttctttgcagGGCTCTGAAATGACTCTGGACAGGTACGCTGCTGCTGAGGGTTTCTATAAG
EST: CCAGGTGTCTAGTCCAGGCCCTTGATGCTGGTCTTGAACATGCCCTCTTG GGCTCTGAAATGACTCTGGACAGGTACGCGGCTGCTGAGGGTTTCTATAAGEST: gi|58661399|gb|CK050079.1|CK050079
genomic: CCAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTTGAACATGCCCTCTTGgtaagcaatt ... ttctttgcagGGCTCTGAAATGACTCTGGACAGGTACGCTGCTGCTGAGGGTTTCTATAAG
EST: CCAAATGTCTAGTCCAGGCCCTTGATGCTGGTCGTGAACATGCCCTCTTG GGCTCTGAAATGACTCTGGACAGGTACGCGGCTGCTGAGGGTTTCTATAAG
genomic: CCAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTTGAACATGCCCTCTTGgtaagcaatt ... ttctttgcagGGCTCTGAAATGACTCTGGACAGGTACGCTGCTGCTGAGGGTTTCTATAAG
ttgtgttttcgtgaattgaatttctaaaactctatattttctatgttctttgcagGGCTCTGAAATGACTCTGGACAGGTACGCTGCTGCTGAGGGTTTCTATAAGCTAGCAATGGCCTACGCGCCTGTGCCAGATCTTCATATAATGTGGTTAC
ttctaaa putative branch site (score: 42)
ttttctatgttcttt putative PPT
aattgaatttctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacacttgaaacacctaaatatcagctatgctatttctttccatttgtgttttcgtgaattgaatttctaaaactctatattttctatgttctttgcagGGCTCTGAAATGACTCTGGACAGGTACGCTGCTGCTGAGGGTTTCTATAAGCTAGCAATGGCCTACGCGCCTGTGCCAGATCTTCATATAATGTGGTTAC
- - - - - - -acctaaa
- - - - - - - - - - - - -gctatgc
- - - - - - - - - - - - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaac