1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatatttttagtatctagtcacgtttttctcttgtggggaactagtcatgctatttaatatggttgcacaatgtcatgctgttggcgtatgaagagatgtcatgctgccttctttagtttatgtgcctcttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG
species | Oryza sativa |
transcript | LOC_Os03g20520.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACCAATACTTTGTCAAG GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATEST: gi|218492797|gb|FG953626.1|FG953626
genomic: ACCAATACTTTGTCAAGgtaatatttt ... ttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
EST: CAGGAATGTACCAATACTTTGTCAAG GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATEST: gi|218505492|gb|FG958279.1|FG958279
genomic: CAGGAATGTACCAATACTTTGTCAAGgtaatatttt ... ttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
EST: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAG GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATEST: gi|25803052|gb|CA759013.1|CA759013
genomic: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAGgtaatatttt ... ttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
EST: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAG GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAGATCAACTCAAATEST: gi|88989740|gb|CI107427.1|CI107427
genomic: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAGgtaatatttt ... ttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
EST: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAG GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATEST: gi|8859147|gb|AU096465.1|AU096465
genomic: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAGgtaatatttt ... ttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
EST: NCAGGAGCNCACAAATGGATTAACCAGGAATGTACCAATACTTTGTCAAG GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATEST: gi|701663|gb|D47954.1|D47954
genomic: ACAGGAGCACACAAATGGATTAA-CAGGAATGTACCAATACTTTGTCAAGgtaatatttt ... ttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
EST: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAG GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATEST: gi|29657637|gb|CB653912.1|CB653912
genomic: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAGgtaatatttt ... ttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
EST: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAG GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATEST: gi|58690521|gb|CK079208.1|CK079208
genomic: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAGgtaatatttt ... ttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
EST: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAG GTTGTTCCCACGATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
genomic: TACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAGgtaatatttt ... ttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAAT
gcgtatgaagagatgtcatgctgccttctttagtttatgtgcctcttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG
tgcctctttt CT-rich tract
tttagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatttttagtatctagtcacgtttttctcttgtggggaactagtcatgctatttaatatggttgcacaatgtcatgctgttggcgtatgaagagatgtcatgctgccttctttagtttatgtgcctcttttgtgcagGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA