1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcaaaaaataatatcagtgtcactcctgagttatgaacatggcaataaattgcgtactaatgttttcttatcttgcaagGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAGCTGTTCACCTCAAGATAACAGTTCAGAGGCTCTGAAAACAGACTCCAAC
species | Oryza sativa |
transcript | LOC_Os03g17570.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGATGAACGAAATATTCTGAAAAGATCAGATCTCTCAGCTTTCACCAG GTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAGEST: gi|29642367|gb|CB647374.1|CB647374
genomic: TGATGAACGAAATATTCTGAAAAGATCAGATCTCTCAGCTTTCACCAGgtgcaaaaaa ... atcttgcaagGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAG
EST: CATGATGAACGAAATATTCTGAAAAGATCAGATCTCTCAGCTTTCACCAG GTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAGEST: gi|428143|gb|D24291.1|D24291
genomic: CATGATGAACGAAATATTCTGAAAAGATCAGATCTCTCAGCTTTCACCAGgtgcaaaaaa ... atcttgcaagGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAG
EST: CAGATCTCTCAGCTTTCACCAG GTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAGEST: gi|58682152|gb|CK070839.1|CK070839
genomic: CAGATCTCTCAGCTTTCACCAGgtgcaaaaaa ... atcttgcaagGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAG
EST: CAGCTTTCACCAG GTACCA-A-AACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAGEST: gi|58688913|gb|CK077600.1|CK077600
genomic: CAGCTTTCACCAGgtgcaaaaaa ... atcttgcaagGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAG
EST: CATGATGAACGAAATATTCTGAAAAGATCAGATCTCTCAGCTTTCACCAG GTACCATACAACTGTGGCTTCTAATCAEST: gi|88960958|gb|CI382639.1|CI382639
genomic: CATGATGAACGAAATATTCTGAAAAGATCAGATCTCTCAGCTTTCACCAGgtgcaaaaaa ... atcttgcaagGTACCATACAACTGTGGCTTCTAATCA
EST: CATGATGAACGAAATATTCTGAAAAGATCAGATCTCTCAGCTTTCACCAG GTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAG
genomic: CATGATGAACGAAATATTCTGAAAAGATCAGATCTCTCAGCTTTCACCAGgtgcaaaaaa ... atcttgcaagGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAG
cctgagttatgaacatggcaataaattgcgtactaatgttttcttatcttgcaagGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAGCTGTTCACCTCAAGATAACAGTTCAGAGGCTCTGAAAACAGACTCCAAC
tactaat putative branch site (score: 1)
tgttttcttatctt CT-rich tract
taatgttttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcaaaaaataatatcagtgtcactcctgagttatgaacatggcaataaattgcgtactaatgttttcttatcttgcaagGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAGCTGTTCACCTCAAGATAACAGTTCAGAGGCTCTGAAAACAGACTCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT