1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttgcgtacagtaacaaatacatctcatttacccatcaggacttcatattcctttctggaacaaaccgttgtttaacaaaattccgtctgacataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCATACAGTGGCGGCCTTGGAGGGATATCATTTGACGGAGACATGCTTATCG
species | Oryza sativa |
transcript | LOC_Os03g15780.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCCCCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCAEST: gi|29616792|gb|CB621804.1|CB621804
genomic: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
EST: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCAEST: gi|86485602|gb|CI128235.1|CI128235
genomic: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
EST: GTTAGTGGAGCACCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCAEST: gi|29616044|gb|CB621056.1|CB621056
genomic: GTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
EST: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCAEST: gi|29662736|gb|CB659011.1|CB659011
genomic: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
EST: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCAEST: gi|29646546|gb|CB651553.1|CB651553
genomic: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
EST: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCAEST: gi|29662735|gb|CB659010.1|CB659010
genomic: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
EST: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCAEST: gi|25803679|gb|CA759640.1|CA759640
genomic: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
EST: ATGCCCTGCGANCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCAEST: gi|29628879|gb|CB633890.1|CB633890
genomic: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
EST: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCAEST: gi|29614551|gb|CB619564.1|CB619564
genomic: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
EST: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG GTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
genomic: ATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAGgtatgttgcc ... acataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCA
atattcctttctggaacaaaccgttgtttaacaaaattccgtctgacataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCATACAGTGGCGGCCTTGGAGGGATATCATTTGACGGAGACATGCTTATCG
gtctgac putative branch site (score: 3)
ttgtttaacaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcgtacagtaacaaatacatctcatttacccatcaggacttcatattcctttctggaacaaaccgttgtttaacaaaattccgtctgacataaccagGTGAAAGCCATGGAGCTGATAGACGAGCTAGAGGTCACAAGACGAGGACCATACAGTGGCGGCCTTGGAGGGATATCATTTGACGGAGACATGCTTATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG