1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtttgttcaagacgtaaaacctccaaatgttttcatcatttcccttatccagcgaggtgacatgttgatatttatttctagGTATTACGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGAGGTATAAGAGACTTCACAGATGCAAATGGGAG
species | Oryza sativa |
transcript | LOC_Os03g15120.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTAGAG GTATTACCGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGEST: gi|58692209|gb|CK080896.1|CK080896
genomic: ATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTAGAGgtttgttcaa ... ttatttctagGTATTAC-GTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGG
EST: ATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTAGAG GTATTACGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGA
genomic: ATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTAGAGgtttgttcaa ... ttatttctagGTATTACGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGA
atgttttcatcatttcccttatccagcgaggtgacatgttgatatttatttctagGTATTACGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGAGGTATAAGAGACTTCACAGATGCAAATGGGAG
tgttgat putative branch site (score: 19)
tttatttct CT-rich tract
atgttgatatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttcaagacgtaaaacctccaaatgttttcatcatttcccttatccagcgaggtgacatgttgatatttatttctagGTATTACGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGAGGTATAAGAGACTTCACAGATGCAAATGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG