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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcatctgatgcatttacctgcattgtcaaatagtagaaatttaactgtttatgtctggagaaatgtgatgtttttttcatttgccttgtgtagGACACCGTGGCATCTTTGATCGCTGACATGCTCCAATGGCCACACAGAATCGTCGTCCCACTGGGCGGAGTCGACGTCGACGTAAG

Basic information

species Oryza sativa
transcript LOC_Os03g14700.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g14700.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G359879_T01 (Zea mays), 3'ss of exon 7
gtatgtcatctgatgcatttacctgcat-tgtcaaatagtagaaatttaactgtttatgtctggagaaatgtgatgtttttt-tcatttgccttgtgtagGACACCGTGGCATCTTTGATCGCTGACATGCTCCAATGGCCACACAGAATCGTCGTCCCACTGGGCGGAGTCGACGTCGACGTAAG
|||||  ||    | | |||   | ||  | |    |  |    || ||    | |  |   ||| |||       | |||   | ||   ||| |||||||||| ||||| || |||||| ||||||||||||| ||||||||||||||| | || |||||||| ||||||||||| ||||| ||
gtatgaaattaatttcttttgttttcacctcttgttttattcgtatctacaaatcttggaagggaaaaaataaccatatttcaccgttattcttctgtagGACACGGTGGCGTCATTGATCACTGACATGCTCCAGTGGCCACACAGAATCATTGTTCCACTGGGTGGAGTCGACGTAGACGTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaactgtttatgtctggagaaatgtgatgtttttttcatttgccttgtgtagGACACCGTGGCATCTTTGATCGCTGACATGCTCCAATGGCCACACAGAATCGTCGTCCCACTGGGCGGAGTCGACGTCGACGTAAG
 atttaac  putative branch site (score: 3)
                                tttttttcatttgcct  putative PPT
                             atgtttttttcattt  TA-rich tract