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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactattttagaatcactgtcagtttccctgcatttatatcattttctcatttgcgtacatccattatcactaaactatgtacgctcttcttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTGTAAGATTTCAGTATGCTGTCTTACC

Basic information

species Oryza sativa
transcript LOC_Os03g13970.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G700055_T01 (Zea mays), 3'ss of exon 2
tactattttagaatcactgtcagtttccctgcatttatatcattttctcatttgcgtacatccattatcactaaactatgtacgctcttcttcctga-cagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTGTAAGATTTCAGTATGCTGTCTTACC-
 |  ||| | |      | |     | |  | || |  |  | | |   | | || |  ||     |  |  ||  | | |    |  ||||| | | ||| ||||||||||||||||||| ||||||||  ||||||| |||||||| |   ||||  |    |||   || ||||     ||  ||      || |  | 
aataattgtggtgcatgtatgcaaatacacgaatcttgactagtctagtaat-gcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGCTTCAAG-CTAGAGTGATGTCGTTGTGGTGCTTTTGTGACTGATCATCTCT

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G078663_T03 (Zea mays), 3'ss of exon 3
tactattttagaatcactgtcagtttccctgcatttatatcattttctcatttgcgtacatccattatcactaaactatgtacgctcttcttcctga-cagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTGTAAGATTTCAGTATGCTGTCTTACC-
 |  ||| | |      | |     | |  | || |  |  | | |   | | || |  ||     |  |  ||  | | |    |  ||||| | | ||| ||||||||||||||||||| | ||||||  ||||||| |||||||| |   ||||  |    |||   ||  |||     ||  ||      || |  | 
aataattgtggtgcatgtatgcaaatacacgaatcttgactagtctagtaat-gcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTTAGACAAAACAGAAGACGAGAAGAACTGCTTCAAG-CTGGAGTGATGTCGCTGTGGTGCTTTTGTGACTGATCATCTCT

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G007884_T01 (Zea mays), 3'ss of exon 4
tactattttagaatcactgtcagtttccctgcatttatatcattttctcatttgcgtacatccattatcactaaactatgtacgctcttcttcctga-cagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTGTAAGATTTCAGTATGCTGTCTTACC
 |  ||| | |      | |     | |  | || |  |  | | |   | | || |  ||     |  |  ||  | | |    |  ||||| | | ||| ||||||||||||||||||| ||||||||  ||||||| |||||||| |   ||||                                            
aataattgtggtgcatgtatgcaaatacacgaatcttgactagtctagtaat-gcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGCTTCAAGCTAGAG-------------------------------------

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G147671_T02 (Zea mays), 3'ss of exon 9
tactattttagaatcactgtca-gtttccctgcatttatatcattttctcatttgcgtacatccattatcactaaactatgtacgctcttcttcctga-cagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTGTAAGATTTCAGTATGCTGTCTTACC
 | |      |||   || ||  || |    | || |  |  | | |   | | |  |  ||     |  |  ||  | | |    |  ||||| | | ||||||||||||||||||||||| ||||||||  ||||||| |||||||| | |   | |    ||    ||||| |                          
-agttcacatgaactgctatcctgtatttacgaatcttgactagtctagtaat-gtatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT--------------------------

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G165926_T02 (Zea mays), 3'ss of exon 9
tactattttagaatcactgtcagtttccctgcatttatatcattttc-tcatttgcgtacatccattatcactaaactatgtacgctcttcttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTGTAAGATTTCAGTATGCTGTCTTACC
| |   |  |   | |   |    |    || || |  |  | | |  | ||   ||||  |  |   |        ||| ||   | |  ||    |||||||||||||||||||||||  ||||||||  ||||||| || ||||| | |   | |    ||    ||||| |                          
ttcacatgaactgttatcctgcaatgttatgaatcttgactagtctggtaatacacgtatgtggaaatttgaaggtttatttat-ttatctttttaaacagCAAGAGAAGAAGGAAGACACGTCAGACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88266883|gb|CI368659.1|CI368659
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88845879|gb|CI084609.1|CI084609
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86834441|gb|CI344386.1|CI344386
EST:     CCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAC                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: CCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86491338|gb|CI133971.1|CI133971
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86431099|gb|CI083522.1|CI083522
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88846191|gb|CI372959.1|CI372959
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86255506|gb|CI065183.1|CI065183
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|218485696|gb|FG969920.1|FG969920
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAAATCAGAC
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAA-TCAGAC
EST: gi|89187364|gb|CI047431.1|CI047431
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88455786|gb|CI524205.1|CI524205
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86435975|gb|CI107208.1|CI107208
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86428998|gb|CI075679.1|CI075679
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88831185|gb|CI081995.1|CI081995
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88368007|gb|CI561595.1|CI561595
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|33654151|gb|CF276765.1|CF276765
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88902442|gb|CI087980.1|CI087980
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88262630|gb|CI366404.1|CI366404
EST:     TGACCCCTCTGTGAAAGATTTGCTGGCATCATTCCATGGGGCACGGCGAG                         CAAGAGAAGAAGGAAGACGAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: TGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCAT-GGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86538942|gb|CI179148.1|CI179148
EST:     ATGACCCCTCTGTGAGAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88443908|gb|CI552453.1|CI552453
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86478545|gb|CI121178.1|CI121178
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAGGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|94362977|gb|CI053138.1|CI053138
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88203319|gb|CI203168.1|CI203168
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88437840|gb|CI533797.1|CI533797
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|58605826|gb|CK033859.1|CK033859
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAAACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86512255|gb|CI154888.1|CI154888
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88219664|gb|CI219224.1|CI219224
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88434822|gb|CI549019.1|CI549019
EST:     ACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88842826|gb|CI371726.1|CI371726
EST:     ATGACCCCTCTGTGAAAGATTTGCTGCCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86512727|gb|CI155360.1|CI155360
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88384701|gb|CI556579.1|CI556579
EST:     TGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: TGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88344598|gb|CI637207.1|CI637207
EST:     ATGACCCCTCTGTGAAAGATTTGGTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88841547|gb|CI080803.1|CI080803
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86414186|gb|CI068589.1|CI068589
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88997551|gb|CI390217.1|CI390217
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|218483651|gb|FG955547.1|FG955547
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAAACAAGCCAGAAGATGAGAAAGAA-TA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAA-GAAATA
EST: gi|86259614|gb|CI065487.1|CI065487
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|29673812|gb|CB670087.1|CB670087
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88297073|gb|CI542785.1|CI542785
EST:     TGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: TGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|89192813|gb|CI050111.1|CI050111
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|24468801|gb|CA305750.1|CA305750
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAAACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88273807|gb|CI394213.1|CI394213
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86435819|gb|CI107052.1|CI107052
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|29686951|gb|CB683226.1|CB683226
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88960606|gb|CI006567.1|CI006567
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86255672|gb|CI066735.1|CI066735
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAAAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88255819|gb|CI353690.1|CI353690
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86492426|gb|CI135059.1|CI135059
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88458472|gb|CI550012.1|CI550012
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|29638893|gb|CB643902.1|CB643902
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88970944|gb|CI387063.1|CI387063
EST:     CCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: CCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|86840416|gb|CI342593.1|CI342593
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|89167578|gb|CI108979.1|CI108979
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|89185635|gb|CI047504.1|CI047504
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA
EST: gi|88265231|gb|CI369005.1|CI369005
EST:     ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG                         CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGATGAAATAA
genomic: ATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgctttt ... ttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcatttgcgtacatccattatcactaaactatgtacgctcttcttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTGTAAGATTTCAGTATGCTGTCTTACC
                       cactaaa  putative branch site (score: 2)
                                   tacgctcttcttcct  putative PPT
                          taaactat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tactattttagaatcactgtcagtttccctgcatttatatcattttctcatttgcgtacatccattatcactaaactatgtacgctcttcttcctgacagCAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTGTAAGATTTCAGTATGCTGTCTTACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG