1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttaagtggctgattggatctgattacaattattttccccttcctttttgtctccactagctctttttgcagaatttgatgtatttcttaaaaatgtgcagGCCATCGGTGACATCGAGAAGGCAAAGGAGACGCTAACTGGTTTTCTCGAACAATGCGATTTGACAAAATCAATTATTGAG
species | Oryza sativa |
transcript | LOC_Os03g11200.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCAGATTTTGCCTACTTTGCTGATTCAGTACTCACGATTCTTATCTTTG GCCATCGGTGACATCGAGAAAGGCAAAGGAGACGCTAACTGGNTTTCTCGAEST: gi|29666429|gb|CB662704.1|CB662704
genomic: GCCAGATTTTGCCTACTTTGCTGATTCAGTACTCACGATTCTTATCTTTGgtaagtgtat ... aaatgtgcagGCCATCGGTGACATCGAGAA-GGCAAAGGAGACGCTAACTGGTTTTCTCGA
EST: GCCAGATTTTGCCTACTTTGCTGATTCAGTACTCACGATTCTTATCTTTG GCCATCGGTGACATCGAGAAGGCAAAGGAGACGCTAACTGGTTTTCTCGAAEST: gi|218489463|gb|FG957652.1|FG957652
genomic: GCCAGATTTTGCCTACTTTGCTGATTCAGTACTCACGATTCTTATCTTTGgtaagtgtat ... aaatgtgcagGCCATCGGTGACATCGAGAAGGCAAAGGAGACGCTAACTGGTTTTCTCGAA
EST: GATTCAGTACTCACGATTCTTATCTTTG GCCATCGGTGACATCGAGAAGGCAAAGGAGACGCTAACTGGTTTTCTCGAA
genomic: GATTCAGTACTCACGATTCTTATCTTTGgtaagtgtat ... aaatgtgcagGCCATCGGTGACATCGAGAAGGCAAAGGAGACGCTAACTGGTTTTCTCGAA
tttgtctccactagctctttttgcagaatttgatgtatttcttaaaaatgtgcagGCCATCGGTGACATCGAGAAGGCAAAGGAGACGCTAACTGGTTTTCTCGAACAATGCGATTTGACAAAATCAATTATTGAG
atttgat putative branch site (score: 28)
aatttgatgtatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagtggctgattggatctgattacaattattttccccttcctttttgtctccactagctctttttgcagaatttgatgtatttcttaaaaatgtgcagGCCATCGGTGACATCGAGAAGGCAAAGGAGACGCTAACTGGTTTTCTCGAACAATGCGATTTGACAAAATCAATTATTGAG
- - - -gctgatt
- - - - - - - - -tctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgt