1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttggttcctgtcaagctattcattcacaggcttaacttgctgttggtcgagcatatgtattgcaaacagtttgttggcctggaccctggatcgcaagtctgtaacatatgctgctttttgtctcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAACGTAACATGAACGGAACGCCATCTGCTGCTGTTGGATTGCACTGGAAA
species | Oryza sativa |
transcript | LOC_Os03g10940.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATG GCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAEST: gi|15852784|gb|BI805580.1|BI805580
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
EST: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATG GCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAEST: gi|87016659|gb|CI275661.1|CI275661
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
EST: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATG GCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAEST: gi|66923472|gb|CX110320.1|CX110320
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
EST: AACTTATTCGCTTCCACCACCATGACAGGCTGACAGCTCGTGAA-CTATG GCGCATCCCTACTTTGAACEST: gi|88490510|gb|CI427782.1|CI427782
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAAC
EST: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATG GCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAEST: gi|25806912|gb|CA762873.1|CA762873
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
EST: AACTTATTCGCTTCGACCACCATGACAGGCTGACAGCTCGTGAAGCTATG GCGCACCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAEST: gi|86261473|gb|CI017215.1|CI017215
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
EST: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATG GCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAEST: gi|12623221|gb|AU173434.1|AU173434
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
EST: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATG GCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAEST: gi|88281202|gb|CI402400.1|CI402400
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
EST: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATG GCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAEST: gi|86425593|gb|CI070690.1|CI070690
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
EST: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATG GCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
genomic: AACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGgttggttcct ... tcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGA
cctggaccctggatcgcaagtctgtaacatatgctgctttttgtctcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAACGTAACATGAACGGAACGCCATCTGCTGCTGTTGGATTGCACTGGAAA
ctgtaac putative branch site (score: 12)
ctgctttttgtctccc putative PPT
taacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttcctgtcaagctattcattcacaggcttaacttgctgttggtcgagcatatgtattgcaaacagtttgttggcctggaccctggatcgcaagtctgtaacatatgctgctttttgtctcccctgcagGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAACGTAACATGAACGGAACGCCATCTGCTGCTGTTGGATTGCACTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT